Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L19
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   179   1e-45
Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical pr...    31   0.55 
U41009-1|AAA82278.3|  501|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  179 bits (435), Expect = 1e-45
 Identities = 85/109 (77%), Positives = 95/109 (87%), Gaps = 1/109 (0%)
 Frame = -3

Query: 488 MAP-RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 312
           MAP RK K  +E+  V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 311 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 165
           MKVKADRDE+SPYAAMLAAQDVA++CK LGI ALHIKLRATGG +TKTP
Sbjct: 61  MKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTP 109



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 25/38 (65%)
 Frame = -1

Query: 181 TKQRXPGPGAQXXXXXXXXXSMKIGRIEDVTPVPSDXT 68
           T+ + PGPGAQ          MKIGRIEDVTP+PSD T
Sbjct: 104 TRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCT 141


>Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical
           protein E02H1.1 protein.
          Length = 308

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -3

Query: 374 DTFVHVTDLSGRETIARV---TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHI 204
           +  V  + L   +T+  V   TG + VK      +  A  +  + +AE  K +  T L  
Sbjct: 40  NAIVEKSALKATDTVLEVGPGTGNLTVKMLEVAKTVIACEIDPRMIAEVKKRVMGTPLQN 99

Query: 203 KLRATGGNKTKTPWSWCSVCTS 138
           KL+  GG+  K  W +  VC +
Sbjct: 100 KLQVNGGDVMKMEWPFFDVCVA 121


>U41009-1|AAA82278.3|  501|Caenorhabditis elegans Hypothetical
           protein C06E7.2 protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = +1

Query: 184 PPVARSFMCKAVMPR-VLHFSATSCAANIAA*GDAS-SRSAFTFMPPVTRAIVSRPDKSV 357
           PP  R  M  A  P  V   SATS + ++    +++  +      PP    + SRP    
Sbjct: 272 PPTTRLNMLSASHPEHVTCISATSFSFDVGIIRESTVEKLKVDPRPPFGTKVSSRPSSKA 331

Query: 358 T*TNVSLNEAKMCATPNTVSPTK 426
           +  N   N+    +TP   SPTK
Sbjct: 332 SKLNEQFNQKHKASTP---SPTK 351


>Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical
           protein M28.6 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -3

Query: 434 PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 306
           P H  G T FG  H   + +   + +TDL  R TIA VT G+K
Sbjct: 365 PIHRAG-TQFGFGH---TGHGCQMVITDLKNRVTIAYVTNGLK 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,025,455
Number of Sequences: 27780
Number of extensions: 285279
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)