Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L19
(550 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A) 177 5e-45
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi... 176 7e-45
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo... 175 1e-44
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ... 36 0.018
At1g35920.1 68414.m04461 hypothetical protein includes At5g34960... 31 0.51
At5g04480.1 68418.m00447 expressed protein 29 2.0
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960... 29 2.7
At2g14450.1 68415.m01617 hypothetical protein includes At5g34960... 29 2.7
At1g52780.1 68414.m05966 expressed protein 27 6.2
At5g53640.1 68418.m06663 F-box family protein contains F-box dom... 27 8.3
At5g12370.1 68418.m01455 exocyst complex component Sec10-related... 27 8.3
At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative... 27 8.3
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 27 8.3
>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
Length = 150
Score = 177 bits (430), Expect = 5e-45
Identities = 84/108 (77%), Positives = 94/108 (87%)
Frame = -3
Query: 488 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 309
M+ RK K K +V VTLGP GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 308 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 165
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRATGGNKTKTP
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTP 107
Score = 47.2 bits (107), Expect = 7e-06
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = -1
Query: 178 KQRXPGPGAQXXXXXXXXXSMKIGRIEDVTPVPSDXT 68
K + PGPGAQ MKIGRIEDVTP+P+D T
Sbjct: 103 KTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
to 40S ribosomal protein S14 GB:P19950 [Zea mays]
Length = 150
Score = 176 bits (429), Expect = 7e-45
Identities = 84/108 (77%), Positives = 93/108 (86%)
Frame = -3
Query: 488 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 309
M+ RK K K E VTLGP GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVET-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 308 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 165
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRATGGNKTKTP
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTP 107
Score = 47.2 bits (107), Expect = 7e-06
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = -1
Query: 178 KQRXPGPGAQXXXXXXXXXSMKIGRIEDVTPVPSDXT 68
K + PGPGAQ MKIGRIEDVTP+P+D T
Sbjct: 103 KTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
ribosomal protein S14 -Zea mays,PIR2:A30097
Length = 150
Score = 175 bits (427), Expect = 1e-44
Identities = 83/108 (76%), Positives = 93/108 (86%)
Frame = -3
Query: 488 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 309
M+ RK K K E VTLGP GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTKEPKVE-NVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 308 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTP 165
KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRATGGNKTKTP
Sbjct: 60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTP 107
Score = 47.2 bits (107), Expect = 7e-06
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = -1
Query: 178 KQRXPGPGAQXXXXXXXXXSMKIGRIEDVTPVPSDXT 68
K + PGPGAQ MKIGRIEDVTP+P+D T
Sbjct: 103 KTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
putative contains Pfam profile: PF00411: Ribosomal
protein S11
Length = 314
Score = 35.9 bits (79), Expect = 0.018
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = -3
Query: 416 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 237
ET + HI N+TFV VTD G +G + + + Y A A+++ +
Sbjct: 190 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 249
Query: 236 CKTLGITALHIKL 198
K +G+ ++ +K+
Sbjct: 250 AKAMGLKSVVVKV 262
>At1g35920.1 68414.m04461 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 567
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -3
Query: 236 CKTLGITALHIKLRATG-GNKTKTPWSWCSVCTS 138
CKT HI G NK K P WC CTS
Sbjct: 293 CKTCNKKVNHIHAGVNGVNNKGKKPRFWCDTCTS 326
>At5g04480.1 68418.m00447 expressed protein
Length = 1050
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 218 TALHIKLRATGGNKTKTPWSWCSVCTSGSCSFKYED 111
T L I A G T WS C + G+C +ED
Sbjct: 813 TRLDIDGDAYGSKNALTFWSMCDILNQGNCRTTFED 848
>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 1033
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = -3
Query: 236 CKTLGITALHIKLRATG-GNKTKTPWSWCSVCTS 138
CKT HI G NK K P WC C S
Sbjct: 282 CKTCNKKVNHIHAGVNGVNNKGKKPKFWCDTCKS 315
>At2g14450.1 68415.m01617 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 544
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = -3
Query: 236 CKTLGITALHIKLRATG-GNKTKTPWSWCSVCTS 138
CKT HI G NK K P WC C S
Sbjct: 283 CKTCNKKVNHIHAGVNGVNNKGKKPRFWCETCKS 316
>At1g52780.1 68414.m05966 expressed protein
Length = 1059
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = -3
Query: 293 RDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPWSWCSVCTSGSCSFKYE 114
RDE++P + DV +KCK++ +A +KL + ++TP + + F+Y
Sbjct: 43 RDESAPKISYDRINDVKKKCKSVLSSASELKLE----DISRTPRK-----SKRNLGFRYG 93
Query: 113 DW 108
DW
Sbjct: 94 DW 95
>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
Pfam:PF00646
Length = 917
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 467 LCFFSGPWLSL*LESCQNLKA 529
LC + WL LESC NLK+
Sbjct: 807 LCIYDLKWLPTFLESCPNLKS 827
>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
low similarity to SP|O00471 Exocyst complex component
Sec10 (hSec10) {Homo sapiens}
Length = 858
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 320 TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 213
+GG+++K D +E + A V EK + LGI A
Sbjct: 777 SGGLRLKRDLNEYVGFVKSFGAPSVDEKFELLGIIA 812
>At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative
strong similarity to ferredoxin--nitrite reductase
[Nicotiana tabacum] GI:19893; contains Pfam profiles
PF03460: Nitrite/Sulfite reductase ferredoxin-like half
domain, PF01077: Nitrite and sulphite reductase 4Fe-4S
domain
Length = 586
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/74 (29%), Positives = 29/74 (39%)
Frame = -3
Query: 377 NDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 198
ND + GR + GG +EA P A + A DV CK + + L
Sbjct: 265 NDLAYMPANKDGRFGFNLLVGGFFSPKRCEEAIPLDAWVPADDVLPLCK--AVLEAYRDL 322
Query: 197 RATGGNKTKTPWSW 156
T GN+ KT W
Sbjct: 323 -GTRGNRQKTRMMW 335
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 119 YEDWPH*RCHPRTIRXDPEEGWPK 48
YEDW H + R + + EE +PK
Sbjct: 1039 YEDWTHEKREKRKVLVEEEETYPK 1062
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,264,425
Number of Sequences: 28952
Number of extensions: 260734
Number of successful extensions: 601
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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