Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L17
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    26   4.7  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   4.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.2  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    26   6.2  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.2  

>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -3

Query: 572 TASFLPVLMCSQMLMLSDDICIALSEAGLGQETVFSLITLLHPESRGKIALKSSNPED-P 396
           T  FLP    +  L++ DD  + LS   + +   FS     H +   +IA + S  E  P
Sbjct: 46  TTRFLPFCDLNPALLVKDDKLVTLSYPQISKYFTFS--PFEHTDK--QIAERFSKGESLP 101

Query: 395 PIIYSGYFTNENDLDNFAHY 336
            ++Y G        DN++ +
Sbjct: 102 VLVYMGNEERNGPTDNWSQH 121


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 395 PIIYSGYFTNENDLDNFAHYLENFNTVIN 309
           P++ S    N    D+F   +E FN++IN
Sbjct: 820 PVLLSNMTINSETFDDFEFSVEQFNSLIN 848


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -3

Query: 482  QETVFSLITLLH----PESRGKIALKSSNPEDPPIIYSGYFTNENDLDNFAH 339
            ++ VFS+I  ++    P  +   +  SSNP +   ++ GY      ++ FAH
Sbjct: 2831 RQIVFSMINRVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLINRFAH 2882


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 629 ALNKSQSYPDYQVTATVSPTAS 564
           +L+K+ SYP +QV   VSP  S
Sbjct: 155 SLSKTTSYPQFQVRQFVSPIIS 176


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = -3

Query: 593 VTATVSPTASFLPVLMCSQMLMLSDDICIALSEAGLGQETVFSLITLLHPESRGKIALKS 414
           V   VSP++  L     + +L +SDD   + SEA        S   ++ P S  + A   
Sbjct: 165 VDDVVSPSSE-LNAQSVNNILPISDDPKDSTSEAETRDFNWLSKGIVIFPNS-SECAFYG 222

Query: 413 SNPEDPPIIYS-GYFTNENDLDNF 345
           +N ++   +YS G   NEN +++F
Sbjct: 223 NNNDEGMYLYSNGDDLNENTIEDF 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,708
Number of Sequences: 5004
Number of extensions: 56242
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)