Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L17
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600...    51   8e-07
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99...    48   7e-06
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233...    48   7e-06
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455...    41   9e-04
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688...    40   0.003
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517...    39   0.005
07_02_0023 - 11918735-11918827,11919139-11919231,11919320-119194...    31   0.92 
07_03_1662 + 28447419-28447666,28448429-28448573                       31   1.2  
03_02_0963 - 12769715-12769859,12770639-12770889                       30   1.6  
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842...    29   4.9  
11_01_0550 + 4355857-4356051,4357287-4357355,4357429-4357561,435...    28   6.5  
07_01_0126 - 947072-948687,949454-949627,950117-951572                 28   6.5  
02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735...    28   6.5  
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584...    28   8.6  
01_07_0329 - 42767419-42767561,42768295-42768425,42768509-427688...    28   8.6  

>10_08_0682 +
           19858131-19858230,19858313-19858954,19859041-19860016,
           19860105-19860147
          Length = 586

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 9/139 (6%)
 Frame = -3

Query: 470 FSLITLLHPESRGKIALKSSNPEDPPIIYSGYFTNENDLDNFAHYLENFNTVINSTHFKK 291
           F L  +L P S G + L++++P   P +   YF    DL+   H +E    VI S  F  
Sbjct: 420 FILEKILGPVSSGHVELRTTDPRANPSVTFNYFREAEDLERCVHGIETIERVIQSRAFSN 479

Query: 290 L--KSQVVDLKVKQCRQWP-------FGSHEYWACYALNLASTQYHTVGTCAMGDKDIGV 138
               +  V+        +P                Y ++   T +H  G C +G     V
Sbjct: 480 FTYANASVESIFTDSANFPVNLLPRHVNDSRSPEQYCMDTVMTIWHYHGGCHVG----AV 535

Query: 137 VDSRLRVHGVTGLRVVDAS 81
           VD   RV GV GLRV+D+S
Sbjct: 536 VDDDYRVFGVQGLRVIDSS 554


>03_01_0127 +
           988066-988171,988259-988881,988986-989396,989463-990037,
           990137-990194
          Length = 590

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
 Frame = -3

Query: 470 FSLITLLHPESRGKIALKSSNPEDPPIIYSGYFTNENDLDNFAHYLENFNTVINSTHFKK 291
           F L  +L P S G +AL+S++P+  P +   YF +  D++     +E    V+ S  F +
Sbjct: 416 FILEKILGPMSTGHVALRSADPDANPAVTFNYFRDPRDVERCVRGIETIERVVRSRAFAR 475

Query: 290 LK-SQVVDLKV----KQCRQWPFGSHEYWAC-------YALNLASTQYHTVGTCAMGDKD 147
              + V  ++     ++    P       A        Y      T +H  G C +G   
Sbjct: 476 FTYANVTAMEAAVLGRRAGHLPVNLLPRRATDTRPLQQYCRETVMTIWHYHGGCHVG--- 532

Query: 146 IGVVDSRLRVHGVTGLRVVDAS 81
             VVD   RV GV GLRVVD+S
Sbjct: 533 -AVVDQDYRVLGVRGLRVVDSS 553


>02_05_0304 +
           27721413-27721479,27721561-27722208,27722399-27723371,
           27724196-27724237,27724379-27724466,27724911-27725016,
           27726499-27726614
          Length = 679

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 10/152 (6%)
 Frame = -3

Query: 470 FSLITLLHPESRGKIALKSSNPEDPPIIYSGYFTNENDLDNFAHYLENFNTVINSTHFKK 291
           F L  +L P+S G++AL++ +P+D P +   YF++ +DL   A  +     VI S  F +
Sbjct: 409 FILEKVLGPQSTGRLALRNLDPDDNPTVSFNYFSHPDDLRRCAAGIATIERVIRSRAFSR 468

Query: 290 L--KSQVVDLKVKQCRQWPF------GSHEYWAC--YALNLASTQYHTVGTCAMGDKDIG 141
               +      +    ++P       G  +  A   +  +   T +H  G C +G     
Sbjct: 469 FAYPNFAFPATINVTAEFPANLMRMRGGSDPRALEQFCRDTVMTIWHYHGGCQVG----R 524

Query: 140 VVDSRLRVHGVTGLRVVDASVMPTITSGNTXA 45
           VVD   RV G+  LRV+D S        N  A
Sbjct: 525 VVDRDYRVLGIEALRVIDGSTFNASPGTNPQA 556


>04_04_0862 +
           28843654-28844386,28844486-28844895,28844995-28845560,
           28845737-28845803
          Length = 591

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 40/151 (26%), Positives = 59/151 (39%), Gaps = 9/151 (5%)
 Frame = -3

Query: 470 FSLITLLHPESRGKIALKSSNPEDPPIIYSGYFTNENDLDNFAHYLENFNTVINSTHFKK 291
           F L  +L P S G + L++ NP+D P +   YF +  DL      +     VI S  F  
Sbjct: 417 FILEKILGPLSTGHLELRNRNPDDNPSVTFNYFAHPEDLRRCVAGVSVIERVIRSEAFAN 476

Query: 290 LKSQV--VDLKVKQCRQWPFG---SHEYWAC----YALNLASTQYHTVGTCAMGDKDIGV 138
                  V+  +     +P      H+  +     +  +   T +H  G C +      V
Sbjct: 477 FTYPYFSVETLLNMTAGFPVNLRPRHDNDSTSLEQFCKDTVMTIWHYHGGCQVN----RV 532

Query: 137 VDSRLRVHGVTGLRVVDASVMPTITSGNTXA 45
           VD+  RV GV  LRV+D S        N  A
Sbjct: 533 VDAEYRVIGVDALRVIDGSTFNASPGTNPQA 563


>09_03_0047 -
           11867302-11867356,11867461-11868032,11868485-11868873,
           11869018-11869331,11871028-11871382,11872004-11872076
          Length = 585

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
 Frame = -3

Query: 446 PESRGKIALKSSNPEDPPIIYSGYFTNENDLDNFAHYLENFNTVINSTHFKKLKS----- 282
           P S G +AL  ++ +  P +   YF++  DL    + ++    ++ +  F +L +     
Sbjct: 421 PLSTGHLALIDTDVKKNPAVTFNYFSHPQDLTRCVYGIKTIERILKTNRFSELSANTDGH 480

Query: 281 ---QVVDLKVK-QCRQWPFGSHEYWAC--YALNLASTQYHTVGTCAMGDKDIGVVDSRLR 120
              +V+++ V+      P  +++  +   +  +   T +H  G C +G     VVD + R
Sbjct: 481 SMERVLNMSVQANVNLIPKHTNDTESLEQFCRDTVITIWHYHGGCHVGK----VVDQQHR 536

Query: 119 VHGVTGLRVVDASVMPTITSGNTXA 45
           V GV+G+RVVD S        N  A
Sbjct: 537 VLGVSGVRVVDGSTFSRSPGTNPQA 561


>08_02_0598 -
           19149218-19149524,19150325-19150896,19151374-19151762,
           19151850-19152163,19152312-19152356,19153451-19153805,
           19154361-19154430
          Length = 683

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
 Frame = -3

Query: 470 FSLITLLHPESRGKIALKSSNPEDPPIIYSGYFTNENDLDNFAHYLENFNTVINSTHFKK 291
           F L  +  P S G + L  ++    P +   YF +  DL    + ++    ++ + HF  
Sbjct: 427 FILSKIDGPLSTGNLVLVDTDINSNPTVTFNYFQHPKDLSRCVYGIKTIERILKTNHFTN 486

Query: 290 LKSQ--------VVDLKVK-QCRQWPFGSHEYWAC--YALNLASTQYHTVGTCAMGDKDI 144
                       V+++ V       P  +++  +   +  +   T +H  G C +G    
Sbjct: 487 FTLNGGGYPMEVVLNMSVTANINLIPKHTNDSTSMEQFCRDTVVTIWHYHGGCHVGK--- 543

Query: 143 GVVDSRLRVHGVTGLRVVDASVM 75
            VVD + RV GV+GLRV+D S +
Sbjct: 544 -VVDQQYRVIGVSGLRVIDGSTL 565


>07_02_0023 -
           11918735-11918827,11919139-11919231,11919320-11919484,
           11920234-11920327,11921012-11921136,11921228-11921313,
           11921786-11921864,11923777-11923857,11924153-11924260,
           11924870-11924994,11925110-11925530
          Length = 489

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 621 VQSDKAQNERXGTLSMFNKGSM-LLIAXDMLS 713
           V  DKAQ++R   LS+F +GS  L+IA D+ S
Sbjct: 349 VHGDKAQHDRTKALSLFKEGSCPLMIATDVAS 380


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 475 VSCPKPASDRAMHISSLNMSICEHISTGRNEA--VGETVAVT 594
           + C KP  D+ M I+SL   + E I     +A  +G++V VT
Sbjct: 25  IDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVT 66


>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 475 VSCPKPASDRAMHISSLNMSICEHISTGRNEA--VGETVAVT 594
           + C KP  D+ M I+SL   + E I     +A  +GE+V V+
Sbjct: 26  IDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVS 67


>08_02_1171 +
           24880363-24881355,24882553-24882702,24883505-24884210,
           24885012-24885404,24885759-24885805,24886088-24886111
          Length = 770

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = -3

Query: 605 PDYQVTATVSPTASFLPVLMCSQMLMLSDDICIALSEAGLGQETVFSLITLLHPESRGKI 426
           PD+Q TA +S    F  +++ S  L L DDI  + +  GL    V     L HP   GK+
Sbjct: 443 PDHQKTARLS---EFGEMILASFDL-LRDDILSSKTSNGLNVLFVRREDYLAHPRHSGKV 498

Query: 425 ALKSSNPED 399
             + SN ++
Sbjct: 499 ESRLSNEKE 507


>11_01_0550 +
           4355857-4356051,4357287-4357355,4357429-4357561,
           4358248-4358454,4358601-4358716,4358814-4358918,
           4359008-4359180,4359273-4359363,4359682-4359831,
           4359928-4360173
          Length = 494

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 332 ENFNTVINSTHFKKLKSQVVDLKVKQ 255
           E+ + ++NS HF++L + + D KV Q
Sbjct: 295 EDLSRIVNSNHFRRLTNLIEDKKVAQ 320


>07_01_0126 - 947072-948687,949454-949627,950117-951572
          Length = 1081

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 321 HGHQQYTLQKIEVSSGRSKGEAMPAMALWKSRVLG 217
           HGHQ+Y  + +EVSS  +     PA  +   RV G
Sbjct: 84  HGHQEYNPKDLEVSSSFAPSMFNPAKRVRFCRVTG 118


>02_04_0656 -
           24769069-24770814,24771552-24771608,24773307-24773582,
           24773675-24773965
          Length = 789

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 182 HTVGTCAMG-DKDIGVVDSRLRVHGVTGLRVVDASVMPTITSGN 54
           H +G+C MG     G VD+R        L V D SV+PT    N
Sbjct: 721 HHMGSCRMGATAGDGAVDARGESWEAERLYVCDGSVLPTAVGVN 764


>05_02_0033 +
           5847754-5847982,5848308-5848437,5849038-5849116,
           5849194-5849251,5849732-5850795,5850899-5851003,
           5851369-5851473
          Length = 589

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 134 LPPLYLYRPWRKSLRYGTV 190
           LPP Y+ + W +  RYGT+
Sbjct: 375 LPPHYILKRWTQEARYGTI 393


>01_07_0329 -
           42767419-42767561,42768295-42768425,42768509-42768891,
           42769190-42769221,42769395-42769425
          Length = 239

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -3

Query: 458 TLLHPESRGKIALKSSNPEDPPIIYSGYFTNENDLDNFAHYLENFNTVINSTHF-KKLKS 282
           TLL P    ++ L+        +  +GY+     L+N   +LE    V+  T+F KK+  
Sbjct: 136 TLLLPSPHLQMVLRGIFDGMEQLFLNGYYHGNFSLENTYCFLECSTPVVKLTNFRKKVPE 195

Query: 281 QVVDLKVKQCR 249
           Q +   V++ R
Sbjct: 196 QAMTWGVEEVR 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,981,592
Number of Sequences: 37544
Number of extensions: 382479
Number of successful extensions: 1026
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)