Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L17
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08)           85   4e-17
SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_27911| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)          28   8.8  
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)                      28   8.8  

>SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08)
          Length = 79

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 40/63 (63%), Positives = 50/63 (79%)
 Frame = -3

Query: 203 NLASTQYHTVGTCAMGDKDIGVVDSRLRVHGVTGLRVVDASVMPTITSGNTXAPGGMRAE 24
           ++AST +H VGTC MG  +  VVD +LRV G++GLR+VDAS+MPTITSGNT +P  M AE
Sbjct: 11  DIASTIFHPVGTCKMGQDEDAVVDHKLRVRGLSGLRIVDASIMPTITSGNTNSPTIMIAE 70

Query: 23  KAA 15
           KAA
Sbjct: 71  KAA 73


>SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 75  HNACVHHSKTCHTVNS*PRIYHPYIFIAHGASPYGMVLC 191
           H    HH  TC    S   +   +I + H  SP+G+  C
Sbjct: 156 HAVSPHHLTTCRVSTSSYNMPCLHIVLQHAVSPHGLTTC 194


>SB_27911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = -3

Query: 317 VINSTHFKKLKSQVVDLKVKQCR--QWPFGSHE 225
           +I+ TH++KLK+Q +  +  +C+   +P+GS +
Sbjct: 453 IIDQTHWEKLKTQHIVCESAKCKPNMYPYGSED 485


>SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)
          Length = 448

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 75  HNACVHHSKTCHTVNS*PRIYHPYIFIAHGASPYGMVLC 191
           H    H ++TCHT+      Y+ Y  ++H    Y  + C
Sbjct: 316 HTIPCHTTRTCHTIPYHTTQYYHYTNMSHNTVSYHTIPC 354



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 72  WHNACVHHSKTCHTVNS*PRIYHPYIFIAHGASPYGMVL 188
           +H    H ++TCHT+      Y+ Y  ++H    Y  +L
Sbjct: 349 YHTIPCHTTRTCHTIPYHTTQYYHYTNMSHNTVSYHTIL 387


>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
          Length = 1776

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +1

Query: 13  SAAFSALIPPGAXVFPLVMVGITLASTTRRPVTP*TLNLESTTPISLSPMAQVP 174
           S + +  IPP     P      T  +T  R  TP T   E+TTP + +P+   P
Sbjct: 144 STSTTKYIPPPPSP-PTTTTTTTPETTAPRTTTPETTTPETTTPRTTTPVTTTP 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,504,933
Number of Sequences: 59808
Number of extensions: 437889
Number of successful extensions: 1203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)