Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L16
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 144 9e-35
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 141 6e-34
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 133 2e-31
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 36 0.026
09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577 28 9.2
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 144 bits (348), Expect = 9e-35
Identities = 87/205 (42%), Positives = 113/205 (55%), Gaps = 5/205 (2%)
Frame = -2
Query: 681 MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 502
+ + +V + GL L++YL +SY+SGY S+ D+ VF + APAA+ +V RWY+ I+
Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81
Query: 501 -----SYTSAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXX 337
S +AE + ++ DVDLFG
Sbjct: 82 ALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE- 140
Query: 336 XXXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLV 157
+A A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLV
Sbjct: 141 -----RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLV 195
Query: 156 PVGYGINKLQIMCXIEDDKVAVDLL 82
PVGYGI KLQIM I DD V+VD L
Sbjct: 196 PVGYGIKKLQIMMTIVDDLVSVDSL 220
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 141 bits (341), Expect = 6e-34
Identities = 84/200 (42%), Positives = 108/200 (54%), Gaps = 4/200 (2%)
Frame = -2
Query: 669 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTS 490
D+ TA GL L Q+L+ K+YVSG S+ D++VF V P A P+ RWY+ +A+ +
Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALA 66
Query: 489 AERKTWSQGTS----PLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRL 322
+ + G + D+DLFG
Sbjct: 67 SRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD------- 119
Query: 321 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYG 142
+ A K S K KSS+LLDVKPWDDETDMK++E VR+++MEGL WGASKLVPVGYG
Sbjct: 120 ERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYG 179
Query: 141 INKLQIMCXIEDDKVAVDLL 82
I KLQIM I DD V+VD L
Sbjct: 180 IKKLQIMLTIVDDLVSVDSL 199
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 133 bits (321), Expect = 2e-31
Identities = 84/204 (41%), Positives = 106/204 (51%), Gaps = 8/204 (3%)
Frame = -2
Query: 669 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI----- 505
+V + GL L++YL +SY+SGY S D+ V+ AP+++ +V RW+ I
Sbjct: 7 NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLR 66
Query: 504 ASYTSAER---KTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXX 334
S +A+ K S DVDLFG
Sbjct: 67 LSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE-- 124
Query: 333 XXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVP 154
+A A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLVP
Sbjct: 125 ----RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVP 180
Query: 153 VGYGINKLQIMCXIEDDKVAVDLL 82
VGYGI KLQIM I DD V+VD L
Sbjct: 181 VGYGIKKLQIMMTIVDDLVSVDSL 204
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 36.3 bits (80), Expect = 0.026
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Frame = -2
Query: 648 LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 505
L +LNQ L++KS + +G+ PS AD+ VF + G+ PHVLRW + I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577
Length = 411
Score = 27.9 bits (59), Expect = 9.2
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = -2
Query: 753 GRPMTHFLTQPCGYXEKVAT-LKETMAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADV 577
G P T K AT L+E +A + K A G+ A S TP ADV
Sbjct: 3 GEPETSICPSIESSQSKHATVLREMVAAAEAKAAIGVATPTPTAAPCG--STTTPRDADV 60
Query: 576 QVFEQVGKAPAANLPHVLRW 517
+ PAA+LP RW
Sbjct: 61 DDKMTIVGHPAASLPLETRW 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,787,907
Number of Sequences: 37544
Number of extensions: 377832
Number of successful extensions: 941
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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