Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L16
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)             193   1e-49
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   7e-08
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               47   1e-05
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 38   0.009
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   5.4  
SB_57256| Best HMM Match : Cation_ATPase_C (HMM E-Value=3.2)           28   7.1  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  193 bits (471), Expect = 1e-49
 Identities = 98/203 (48%), Positives = 123/203 (60%), Gaps = 3/203 (1%)
 Frame = -2

Query: 681 MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 502
           M  GD+K+  GL+ LN +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I 
Sbjct: 1   MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60

Query: 501 SYTSAERKTWSQGTSPLX---XXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXX 331
           SY   ++    +  S                        ++DLFGS              
Sbjct: 61  SYGEGKQNFPGEKKSVESFGPAGAASEQKPAPADDNDDDEIDLFGSDDEEEEKEAARIRQ 120

Query: 330 XRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPV 151
            RLKAY +KK+KK  +IAKS+I+LDVKPWDDETDM EME  VR+I+ +GLLWGASKLVP+
Sbjct: 121 ERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEKLVRSIQADGLLWGASKLVPL 180

Query: 150 GYGINKLQIMCXIEDDKVAVDLL 82
            YGI KLQI   +EDDK++ D L
Sbjct: 181 AYGIKKLQITVVVEDDKISTDFL 203


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = -2

Query: 600 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 496
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
 Frame = -2

Query: 324 LKAYADKKSKKPALIAKSS---ILLDVKPWDDETDMKEMEN-QVRTIEMEGLLWGASKLV 157
           +KA+A K  +KPA   K       +D+   DDE + +E    + + +         +KLV
Sbjct: 60  IKAFAKKPEEKPAAAKKEDDDDSDIDLFGSDDEEEAEEARQLREKRLAEYNAKKATTKLV 119

Query: 156 PVGYGINKLQIMCXIEDDKVAVD 88
            + YG+ KLQI C IED KV+ D
Sbjct: 120 EIAYGLKKLQITCVIEDAKVSTD 142


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = -2

Query: 165 KLVPVGYGINKLQIMCXIEDDKVAVD 88
           KLV + YG+ KLQI C IED KV+ D
Sbjct: 2   KLVEIAYGLKKLQITCVIEDAKVSTD 27


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 648 LNDLNQYLAEKSYVSGYTPSQADVQ-VFEQVGK 553
           +N L + L EKS+  GY+P+ +DVQ V + V K
Sbjct: 62  VNKLPKGLIEKSWNFGYSPNTSDVQTVMQNVAK 94


>SB_57256| Best HMM Match : Cation_ATPase_C (HMM E-Value=3.2)
          Length = 450

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 193 FNSAYLVFHFLHIGFIIPWLDIKENRGLGNESWFLRLLVSICFQTFFSNSFSFCILFLVT 372
           F +  L+F F+ +  ++ W    ++     E WF ++L S+     F  +F F    LVT
Sbjct: 324 FTTHNLLFFFILLCMVLDWFQPAKSDTAKTELWFSQILASVL--VAFKFAFPFFSASLVT 381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,119,985
Number of Sequences: 59808
Number of extensions: 410092
Number of successful extensions: 886
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)