Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L14
         (479 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.36 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   0.84 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   0.84 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   1.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   2.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   3.4  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    21   4.5  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    21   4.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   4.5  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   4.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.9  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 270 YGFGFETSDGKTAQESAVLKNVGTENE 190
           +G G ETS GK+  ES+   N G E +
Sbjct: 275 FGNGLETSWGKSRDESSWFYNSGWERK 301


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 54  WWFXLEGAGECLLRR 98
           +W  L G GEC +RR
Sbjct: 406 YWIQLRGLGECGIRR 420


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 54  WWFXLEGAGECLLRR 98
           +W  L G GEC +RR
Sbjct: 406 YWIQLRGLGECGIRR 420


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 216 LKNVGTENEALEVRGQYSYVDLDGKVHETTYTADENGFHPSGADIPQ 76
           L+N G  +E++ +      ++ D   HE+T     NG    G +IPQ
Sbjct: 10  LENAGMPDESINISDVIEVIETDPDFHESTMF---NG----GGEIPQ 49


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/40 (25%), Positives = 14/40 (35%)
 Frame = +2

Query: 107 PFSSAVYVVSWTFPSRSTYEYCPRTSRASFSVPTFFNTAD 226
           P   A Y           + Y P      +  PT++N AD
Sbjct: 58  PAKRAAYDCEGVIRHHGQWNYSPDNHFEQYPNPTYYNLAD 97


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 300 QTFDNIGLEGYGFGFETSD 244
           QTF N+ + G+G   E+ D
Sbjct: 118 QTFSNLNISGFGGVQESGD 136


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 288 NIGLEGYGFGFETSD 244
           N+GL  YG GF  +D
Sbjct: 259 NLGLGSYGRGFALAD 273


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 288 NIGLEGYGFGFETSD 244
           N+GL  YG GF  +D
Sbjct: 259 NLGLGSYGRGFALAD 273


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 146 PSRSTYEYCPRTSRASFSVPTFFNTADS 229
           P+RS YE+  +TS  S   P   + AD+
Sbjct: 119 PARSPYEWIKKTSYQSQPNPEPADFADA 146


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 146 PSRSTYEYCPRTSRASFSVPTFFNTADS 229
           P+RS YE+  +TS  S   P   + AD+
Sbjct: 119 PARSPYEWIKKTSYQSQPNPEPADFADA 146


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 109 WFPSLRSRHSPAP 71
           W+ +  SRHSP P
Sbjct: 267 WWENYISRHSPIP 279


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 109 WFPSLRSRHSPAP 71
           W+ +  SRHSP P
Sbjct: 267 WWENYISRHSPIP 279


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 109 WFPSLRSRHSPAP 71
           W+ +  SRHSP P
Sbjct: 267 WWENYISRHSPIP 279


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 109 WFPSLRSRHSPAP 71
           W+ +  SRHSP P
Sbjct: 267 WWENYISRHSPIP 279


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,047
Number of Sequences: 336
Number of extensions: 1944
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)