Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L14
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44729| Best HMM Match : SET (HMM E-Value=0)                         29   2.0  
SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)                      28   3.5  
SB_5297| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.1  
SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_17096| Best HMM Match : Novirhabdo_Nv (HMM E-Value=2.4)             27   8.0  
SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)                27   8.0  
SB_39407| Best HMM Match : TIG (HMM E-Value=0)                         27   8.0  

>SB_44729| Best HMM Match : SET (HMM E-Value=0)
          Length = 1112

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 108 HFRQRCTSSRGPFHRGRRTSTVREPQEPH 194
           HF   C S++ P +RGR T  +R P   H
Sbjct: 503 HFCSTCISNKTPVNRGRLTKCIRCPTAYH 531


>SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 591

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 309 ILQQTFDNIGLEGYGFGFETSDGKTAQESAVLKNVGTENEALEVRGQYSYVDLD 148
           +L+ T D + L G        DG TAQ SA+L  +  +N+    +G+     +D
Sbjct: 265 LLKNTLDTVFLRGQTI---VGDGTTAQLSAILTGIAEKNQPEARKGRKKATTVD 315


>SB_5297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 201 YRRSSIQQIPGLFCHQKFQSQSRNPQGRYCQM 296
           +RR+S    PGL+C +K     +NP G   Q+
Sbjct: 128 FRRASTSCPPGLWCGKKRSIPEQNPSGLELQL 159


>SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 141 PFHRGRRTSTVREPQEPHFRYR 206
           PF R R    V+EP+EP+ +YR
Sbjct: 472 PFERYRFNRRVQEPREPYDQYR 493


>SB_17096| Best HMM Match : Novirhabdo_Nv (HMM E-Value=2.4)
          Length = 211

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
 Frame = +2

Query: 71  GSWGMSAPEGW------KPFSSAVYVVSWTFPSRSTY 163
           G+WG+  PEGW       PF    Y +    PS++ +
Sbjct: 40  GNWGLEIPEGWGSYLRPPPFGGDGYFLELHIPSQTKH 76


>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 828

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 255 ETSDGKTAQESAVLKNVGTENEALEVRGQYSYVDLDGKVHE 133
           ETSDG T QE   +K    E++  EVR      + D  + E
Sbjct: 449 ETSDGDTKQEVPFIKEEQIEDKGPEVRNDMEPHETDVPLQE 489


>SB_39407| Best HMM Match : TIG (HMM E-Value=0)
          Length = 1710

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -3

Query: 333  TTNSKDAVILQQTFDNIGLEGY---GFGFETSDGKTAQESAVLKNVGTENEALEVRGQ 169
            ++N  D + +   + ++ L G     F FE S+  T +  ++  N+GT +  + +RG+
Sbjct: 1074 SSNCPDGITMPVPWCSVPLPGSPQKAFQFEFSECSTPEIESITPNMGTSSTLVTIRGK 1131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,676,497
Number of Sequences: 59808
Number of extensions: 239998
Number of successful extensions: 803
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)