Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L14
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34000.2 68414.m04216 light stress-responsive one-helix prote...    30   0.93 
At1g34000.1 68414.m04215 light stress-responsive one-helix prote...    30   0.93 
At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containi...    29   2.1  
At2g39830.1 68415.m04892 LIM domain-containing protein contains ...    28   2.8  
At1g73970.1 68414.m08567 expressed protein                             28   3.7  
At4g39440.1 68417.m05581 expressed protein  ; expression support...    27   5.0  
At4g18050.1 68417.m02686 ABC transporter family protein contains...    27   5.0  
At5g43670.1 68418.m05337 transport protein, putative similar to ...    27   8.7  

>At1g34000.2 68414.m04216 light stress-responsive one-helix protein
           (OHP2) contains similarity to photosystem II 22 kDa
           protein GI:6006279 from [Arabidopsis thaliana]
          Length = 145

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 120 RCTSSRGPFHRGRRTSTVREPQEP 191
           RC+ + GP  R     T+REPQ+P
Sbjct: 42  RCSQTEGPLRRPSAPPTLREPQKP 65


>At1g34000.1 68414.m04215 light stress-responsive one-helix protein
           (OHP2) contains similarity to photosystem II 22 kDa
           protein GI:6006279 from [Arabidopsis thaliana]
          Length = 172

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 120 RCTSSRGPFHRGRRTSTVREPQEP 191
           RC+ + GP  R     T+REPQ+P
Sbjct: 42  RCSQTEGPLRRPSAPPTLREPQKP 65


>At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 685

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = -3

Query: 249 SDGKTAQESAVLKNVGTENEALEVRGQYSYVDLDGKVHETTYTADENGFHP 97
           S G    E+A ++++  +    ++ G YS+++L+GKVHE  + AD+   HP
Sbjct: 527 SVGGRWDEAAEVRDMMNKKGMKKIPG-YSWIELEGKVHE--FLADDKS-HP 573


>At2g39830.1 68415.m04892 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 503

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 141 PFHRGRRTSTVREPQEPHFRYRR 209
           PFH G   S+   P EP ++YRR
Sbjct: 135 PFHGGLNPSSFIPPYEPSYQYRR 157


>At1g73970.1 68414.m08567 expressed protein 
          Length = 803

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +1

Query: 91  SGGMETIFVSGVRRLVDLSIEVDVRVLSANLKSLIFGTDVLQYSRFLGCFAIRSFKAKAV 270
           S G +++ +S +R   +  IE   ++L +N   +   T   +    L CFAI   +  +V
Sbjct: 291 SSGAQSLEISKLRNSAEKRIEFVAQILVSNGNVVTLPTTQRE-GPLLKCFAIALARCGSV 349

Query: 271 TLKADIVKCL 300
           +  A ++ CL
Sbjct: 350 SSSAPLLLCL 359


>At4g39440.1 68417.m05581 expressed protein  ; expression supported
           by MPSS
          Length = 443

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +1

Query: 112 FVSGVRRLVDLSIEVDVRVLSANLKSLIFGTDVLQYS 222
           F   VRRLV L I+V + VLS  + +L+  T +LQ S
Sbjct: 383 FPKAVRRLVQLYIQVSISVLSV-VCALLSCTTLLQLS 418


>At4g18050.1 68417.m02686 ABC transporter family protein contains Pfam
            profile: PF00005 ABC transporter; similar to
            multidrug-resistant protein CjMDR1 GI:14715462 from
            [Coptis japonica]
          Length = 1281

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 27   TLASIFRWCWWFXLEGAGECLLR 95
            TL   FRWC  F    A EC LR
Sbjct: 1216 TLDEDFRWCLCFSCHSAHECKLR 1238


>At5g43670.1 68418.m05337 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 794

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 143 FPSRSTYEYCPRTSRASFSVPTFFNTADSWA 235
           FP+ S  EY P  SR S S  T    A SW+
Sbjct: 104 FPTYSAVEYSPLPSRQSGSNTTTPTAAASWS 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,643,153
Number of Sequences: 28952
Number of extensions: 173447
Number of successful extensions: 567
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)