Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L11
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0102 - 14434968-14435072,14435305-14435418                       28   7.1  
01_01_0464 - 3431298-3431315,3431586-3433339,3433340-3433589,343...    27   9.4  

>03_03_0102 - 14434968-14435072,14435305-14435418
          Length = 72

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 122 LATIGTMFLKKNKPSPSHANFKIKKNLLININFVRKQ 232
           +ATI  + L  + PSP H+  KIK +  + + F  +Q
Sbjct: 1   MATIDELLLPSSSPSPFHSELKIKDD-SVAVEFYSQQ 36


>01_01_0464 -
           3431298-3431315,3431586-3433339,3433340-3433589,
           3433716-3434041,3434297-3434618
          Length = 889

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 92  ICFIFCRY*NLATIGTMFLKKNKPSPSHANFKIKKNLLININFVRKQT-FKNEI 250
           IC  F    +LA I   F   + P P+ A F   + L +  NF++ QT F  EI
Sbjct: 170 ICGSFSAMHSLAVIDLRFNDLSGPIPNFATFSSLRVLQLGHNFLQGQTSFYGEI 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,792,796
Number of Sequences: 37544
Number of extensions: 185548
Number of successful extensions: 244
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)