Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L10
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...   132   2e-31
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245...   130   5e-31
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841    130   5e-31
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...   104   4e-23
11_06_0513 + 24466131-24469487                                         27   10.0 
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702...    27   10.0 

>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score =  132 bits (318), Expect = 2e-31
 Identities = 62/96 (64%), Positives = 75/96 (78%)
 Frame = -3

Query: 395 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 216
           +TY+M + P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377

Query: 215 IGYGSNKKTRHMLPNGFRKVLVHNVKELESLMMQNR 108
           IGYGS+KKTRH LPN F+K +VHNV ELE LMM NR
Sbjct: 378 IGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413


>09_04_0633 -
           19123930-19124009,19124240-19124344,19124453-19124543,
           19124647-19124709,19126318-19126368,19126878-19126962,
           19127102-19127283,19128493-19128582
          Length = 248

 Score =  130 bits (314), Expect = 5e-31
 Identities = 62/95 (65%), Positives = 73/95 (76%)
 Frame = -3

Query: 383 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 204
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59

Query: 203 SNKKTRHMLPNGFRKVLVHNVKELESLMMQNRKXC 99
           S+KKTRH LPN F+K +VHNV ELE LMM NR  C
Sbjct: 60  SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYC 94


>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score =  130 bits (314), Expect = 5e-31
 Identities = 62/95 (65%), Positives = 73/95 (76%)
 Frame = -3

Query: 383 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 204
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59

Query: 203 SNKKTRHMLPNGFRKVLVHNVKELESLMMQNRKXC 99
           S+KKTRH LPN F+K +VHNV ELE LMM NR  C
Sbjct: 60  SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYC 94


>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score =  104 bits (249), Expect = 4e-23
 Identities = 45/63 (71%), Positives = 53/63 (84%)
 Frame = -3

Query: 287 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELESLMMQNR 108
           +WR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LPN F+K +VHNV ELE LMM NR
Sbjct: 99  SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158

Query: 107 KXC 99
             C
Sbjct: 159 TYC 161



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = -3

Query: 383 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 291
           MA+ P+    IVKKR K+F R  SDRY  LK
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30


>11_06_0513 + 24466131-24469487
          Length = 1118

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -1

Query: 301 TNLRGIGVNLEVLTTESAGGSRVNT*CPTLVTVPTRRPVICSQMDSVR 158
           +N+R + + ++  TTE  G    +T   TL+ + T++ V+  Q   ++
Sbjct: 559 SNIRYMSLTVDHTTTELPGSLTAHTDLRTLILLRTQKMVLSGQKSEIK 606


>10_08_0961 +
           21869612-21869773,21869869-21869956,21870047-21870277,
           21870371-21870538,21870808-21871001,21871151-21871234,
           21871315-21871434,21871621-21871714,21871813-21871973,
           21873237-21873313,21873738-21873932,21874487-21874559,
           21874635-21874721,21874906-21875043,21875181-21875383,
           21875469-21875631,21875861-21875992
          Length = 789

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -1

Query: 421 RGSLSRF*KKHTRWL*DLFTGRQSSKRGRRD---LSGINRIAMTNLRGIGVNLEVLTTES 251
           R ++S   +KH ++L ++   + +  R   +   LSG    +M  L      L VL  ++
Sbjct: 181 RQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQT 240

Query: 250 AGGSRVNT*CP 218
            GGS +NT  P
Sbjct: 241 GGGSLMNTSAP 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,044,027
Number of Sequences: 37544
Number of extensions: 202492
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)