Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L10
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             153   7e-38
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)                  27   5.9  
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  153 bits (371), Expect = 7e-38
 Identities = 67/90 (74%), Positives = 79/90 (87%)
 Frame = -3

Query: 377 IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 198
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 197 KKTRHMLPNGFRKVLVHNVKELESLMMQNR 108
           KKTR ++P+GF+K +VHNVKELE LMM NR
Sbjct: 62  KKTRFLMPDGFKKFVVHNVKELEVLMMMNR 91


>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = -3

Query: 392 TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 213
           +YK++ +P  +P  +     + +   SD+ DK+K    K +    RV    KG+     +
Sbjct: 14  SYKISAKPKSKPAPLDISAAQAMTSNSDKNDKMKVTTPKSKLGHRRVDE--KGETTYKKV 71

Query: 212 GYGSNKKTRHMLPNGFRKV 156
           G  S K  R +L   F ++
Sbjct: 72  GRLSAKPERDVLMQDFAQI 90


>SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -1

Query: 334 RDLSGINRIAMTNLRGIGVNLEVLTTESAGGS 239
           +DL  I   A T+LR +G+N+E+L+   AGGS
Sbjct: 169 KDLMAIVFFA-TDLREVGINIELLSMLPAGGS 199


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -3

Query: 443 FSCGRVTAWFTVAFLK 396
           FSCG V A+FTVAF K
Sbjct: 581 FSCGSVVAFFTVAFSK 596


>SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +3

Query: 183 MTGLLVGTVTNV--GHQV--LTLEPPADSVVNTSRFTPIPLKFVIAIRLMPDKSLRP 341
           M G  + T+T++   H+V  L +EP A  ++ T++FTP  + F+ A  +     +RP
Sbjct: 498 MYGTKLDTITDIIENHKVAILDVEPQALKILRTAKFTPY-VVFISAPSIKGINDIRP 553


>SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)
          Length = 550

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 255 SPQAVQGSILDAQHWLRFQQE 193
           SP+A+QG ++ AQ W   +QE
Sbjct: 151 SPEAIQGFLVSAQEWAIHRQE 171


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 467 NEFGRPMPFSCGRVTAWFTVAFLKETYKMAI--RPVYRPTIVKKRTKRFIRHQSDRY 303
           N FG     SC RV +  T ++      +A+  R VY  TI +    +F+ HQ+  Y
Sbjct: 807 NSFGLHKCLSCSRVLSVETASYSLYPIHLAVPNREVY--TICRDTDSKFLLHQTTPY 861


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,377,334
Number of Sequences: 59808
Number of extensions: 219112
Number of successful extensions: 735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)