Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L07
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 321 6e-89
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 161 1e-40
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 146 4e-36
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 123 3e-29
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 2e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 85 1e-17
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 75 8e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 71 2e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 4e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.6
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 2.8
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 26 4.9
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 8.5
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 8.5
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 321 bits (789), Expect = 6e-89
Identities = 150/171 (87%), Positives = 160/171 (93%)
Frame = -2
Query: 736 EREIVRDIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 557
EREIVRDIKEKL YVALDFEQE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQP
Sbjct: 205 EREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQP 264
Query: 556 SFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST 377
S LG+E+ GIHE YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS+
Sbjct: 265 SALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSS 324
Query: 376 IKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 224
+K+KI+APPERKYSVWIGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 325 MKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 161 bits (390), Expect = 1e-40
Identities = 75/171 (43%), Positives = 112/171 (65%)
Frame = -2
Query: 736 EREIVRDIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 557
E+EIVR+IKEK YVA DF E+ + +Y+LPD Q IT+G E F PE LF P
Sbjct: 210 EKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNP 269
Query: 556 SFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST 377
+G E+ G+H ++ SI+ D+D+R LY+N V+SGG+T+ G +R E+ A++
Sbjct: 270 EMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKK 329
Query: 376 IKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 224
++KI A PER ++ W+GGSILASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 330 NQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 146 bits (353), Expect = 4e-36
Identities = 74/172 (43%), Positives = 112/172 (65%), Gaps = 12/172 (6%)
Frame = -2
Query: 730 EIVRDIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSF 551
E VR++KEKL YV+ D E + + +T L ++Y LPDG+VI +G+ER+ CPE LFQP
Sbjct: 207 ETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHL 266
Query: 550 LGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL------ 389
+G E G+ E ++++I DVDIRK LY V+SGG++MY G+ R++KEI L
Sbjct: 267 VGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVL 326
Query: 388 --APSTI---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 251
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 327 HGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 123 bits (296), Expect = 3e-29
Identities = 69/173 (39%), Positives = 95/173 (54%), Gaps = 11/173 (6%)
Frame = -2
Query: 736 EREIVRDIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 557
+R ++ + KE + V + A AS+ K +E PDG G ERFR E LF P
Sbjct: 249 KRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRISEILFNP 305
Query: 556 SFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQK 404
SF S G+HE VY SI+ CD ++R L N V++GGT++ PG+++R+Q
Sbjct: 306 SFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQA 365
Query: 403 EITALAP-STIKIKII-APPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 251
E+ LA S I + +VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 366 EVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.9 bits (223), Expect = 2e-20
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = -2
Query: 532 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 353
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 352 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 227
ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 84.6 bits (200), Expect = 1e-17
Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Frame = -2
Query: 736 EREIVRDIKEKLXYVALDFEQEMATAAAS--TSLEKSYELPD------------------ 617
E IV +IKE + YV+ +F+++M + LE Y LPD
Sbjct: 211 ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIE 270
Query: 616 GQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTT 437
QV+ + NERF PE LF PS + + GI E V S+ +I+ L N V GG
Sbjct: 271 QQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNC 330
Query: 436 MYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDE 257
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 331 KFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSE 389
Query: 256 SGPGIVHRK 230
G I+ RK
Sbjct: 390 HGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 75.4 bits (177), Expect = 8e-15
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 19/180 (10%)
Frame = -2
Query: 715 IKEKLXYVALDFEQEMATAAASTS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFL 548
IKE+ YV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 547 GMESCG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI- 374
+ + E V N + +D+RK LY N V+SGG+T++ +R+Q+++ + I
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIH 359
Query: 373 -------------KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 233
+ +I+ ++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 360 RSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.9 bits (166), Expect = 2e-13
Identities = 32/115 (27%), Positives = 62/115 (53%)
Frame = -2
Query: 592 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 413
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 412 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 248
+++E+T++ P I + W G S + F+ +++EEY E GP
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 478 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 308
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 307 SLSTFQQMWISKEEYDESGPGIVHRK 230
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -2
Query: 331 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 230
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 406 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 296
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.2 bits (55), Expect = 4.9
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -3
Query: 177 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQRQI 4
VR +A S +L P N SN TP+ + I K N+ S + L D C R I
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSRTI 634
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 168 ELGRAQHHTAPGSRGRAA*KHLRWT 242
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 527 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 399
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 715 IKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQV 608
IKEKL VA EQE A +SL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,234
Number of Sequences: 5004
Number of extensions: 49402
Number of successful extensions: 147
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -