Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L07
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 338 3e-93
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 337 6e-93
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 336 8e-93
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 336 1e-92
SB_56| Best HMM Match : Actin (HMM E-Value=0) 336 1e-92
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 336 1e-92
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 257 8e-69
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 2e-28
SB_54| Best HMM Match : Actin (HMM E-Value=0) 116 2e-26
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 86 3e-17
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 68 9e-12
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 54 1e-07
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 42 4e-04
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 38 0.006
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 32 0.56
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 5.2
SB_7681| Best HMM Match : Annexin (HMM E-Value=0) 29 5.2
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 28 6.9
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 9.1
SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85) 28 9.1
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 338 bits (830), Expect = 3e-93
Identities = 158/171 (92%), Positives = 166/171 (97%)
Frame = -2
Query: 736 EREIVRDIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 557
EREIVRDIKEKL YVALDFEQEMATAAAS+SLEKSYELPDGQVITIGNERFRCPEA+FQP
Sbjct: 205 EREIVRDIKEKLAYVALDFEQEMATAAASSSLEKSYELPDGQVITIGNERFRCPEAMFQP 264
Query: 556 SFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST 377
SFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TM+PGIADRMQKEI+ALAP T
Sbjct: 265 SFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEISALAPPT 324
Query: 376 IKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 224
+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 337 bits (828), Expect = 6e-93
Identities = 158/171 (92%), Positives = 165/171 (96%)
Frame = -2
Query: 736 EREIVRDIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 557
EREIVRDIKEKL YVALDFEQEM TAA+S+SLEKSYELPDGQVITIGNERFRCPEA+FQP
Sbjct: 168 EREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQP 227
Query: 556 SFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST 377
SFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGGTTMYPGIADRMQKEI+ALAP T
Sbjct: 228 SFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEISALAPPT 287
Query: 376 IKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 224
+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 288 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 336 bits (827), Expect = 8e-93
Identities = 158/171 (92%), Positives = 165/171 (96%)
Frame = -2
Query: 736 EREIVRDIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 557
EREIVRDIKEKL YVALDFEQEM TAA+S+S+EKSYELPDGQVITIGNERFRCPEAL QP
Sbjct: 179 EREIVRDIKEKLCYVALDFEQEMQTAASSSSIEKSYELPDGQVITIGNERFRCPEALLQP 238
Query: 556 SFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST 377
SFLGMES GIHET YNSIMKCDVDIRKDLYANTVMSGGTTMYPG+ADRMQKEI+ALAPST
Sbjct: 239 SFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLADRMQKEISALAPST 298
Query: 376 IKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 224
+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 299 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 336 bits (825), Expect = 1e-92
Identities = 157/171 (91%), Positives = 165/171 (96%)
Frame = -2
Query: 736 EREIVRDIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 557
EREIVRDIKEKL YVALDFEQEM TAA+S+SLEKSYELPDGQVITIGNERFRCPEA+FQP
Sbjct: 206 EREIVRDIKEKLCYVALDFEQEMETAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQP 265
Query: 556 SFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST 377
SFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRMQKEIT+LAP T
Sbjct: 266 SFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPT 325
Query: 376 IKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 224
+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 326 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 336 bits (825), Expect = 1e-92
Identities = 157/171 (91%), Positives = 165/171 (96%)
Frame = -2
Query: 736 EREIVRDIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 557
EREIVRDIKEKL YVALDFEQEM TAA+S+SLEKSYELPDGQVITIGNERFRCPEA+FQP
Sbjct: 205 EREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQP 264
Query: 556 SFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST 377
SFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRMQKEIT+LAP T
Sbjct: 265 SFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPT 324
Query: 376 IKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 224
+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 325 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 336 bits (825), Expect = 1e-92
Identities = 157/171 (91%), Positives = 165/171 (96%)
Frame = -2
Query: 736 EREIVRDIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 557
EREIVRDIKEKL YVALDFEQEM TAA+S+SLEKSYELPDGQVITIGNERFRCPEA+FQP
Sbjct: 206 EREIVRDIKEKLCYVALDFEQEMTTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQP 265
Query: 556 SFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST 377
SFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRMQKEI+ALAP T
Sbjct: 266 SFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEISALAPPT 325
Query: 376 IKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 224
+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 326 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 257 bits (629), Expect = 8e-69
Identities = 116/145 (80%), Positives = 132/145 (91%)
Frame = -2
Query: 658 AASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIR 479
A S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGME+ GIHE +YN IMKCDVDIR
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIR 64
Query: 478 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLS 299
KDLY+N V+SGG+TM+PGIADRMQKEI LA +++K+K+IAPPERKYSVWIGGSILASLS
Sbjct: 65 KDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLS 124
Query: 298 TFQQMWISKEEYDESGPGIVHRKCF 224
TFQQMWI+KEEY E GP IVHRKCF
Sbjct: 125 TFQQMWIAKEEYHEYGPPIVHRKCF 149
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 122 bits (295), Expect = 2e-28
Identities = 72/189 (38%), Positives = 105/189 (55%), Gaps = 29/189 (15%)
Frame = -2
Query: 730 EIVRDIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSF 551
E VR +KEKL YV + EQE A +T L + Y LPDG+V+ + ERF PEALFQP
Sbjct: 211 ETVRMMKEKLCYVGYNIEQEQKLALETTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHL 270
Query: 550 LGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL------ 389
+ +E G+ E ++N+I D+D R + Y + V+SGG+TMYPG+ R+++EI L
Sbjct: 271 INVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVL 330
Query: 388 ---------------APSTI-----KIKI-IAPP-ERKYSVWIGGSILAS-LSTFQQMWI 278
P T K KI I P RK+ V++GG++LA + W+
Sbjct: 331 KGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWM 390
Query: 277 SKEEYDESG 251
+++EY+E G
Sbjct: 391 TRKEYEEKG 399
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 116 bits (280), Expect = 2e-26
Identities = 52/97 (53%), Positives = 70/97 (72%)
Frame = -2
Query: 736 EREIVRDIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 557
E++I+RD+KE L Y A+D+E+E+ A S E Y LPDGQ I IG+ERFR E LFQP
Sbjct: 2250 EQQIIRDLKETLCYCAMDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQP 2309
Query: 556 SFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSG 446
S LG + GIHE+++ SI KCD+D+R +L+ N V+SG
Sbjct: 2310 SLLGRDIDGIHESIFKSIKKCDIDLRAELFHNIVLSG 2346
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 85.8 bits (203), Expect = 3e-17
Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 17/145 (11%)
Frame = -2
Query: 607 ITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMY 431
+ + ERF PE F P F + + + E V N I C +D+R+ LY N V+SGG+TM+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMF 255
Query: 430 PGIADRMQKEIT----------------ALAPSTIKIKIIAPPERKYSVWIGGSILASLS 299
R+Q++I + P I+ ++I+ ++Y+VW GGS+LAS
Sbjct: 256 RDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWFGGSMLASTP 315
Query: 298 TFQQMWISKEEYDESGPGIVHRKCF 224
F + +K +YDE GP I F
Sbjct: 316 EFYSVCHTKADYDEHGPSICRHNPF 340
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 67.7 bits (158), Expect = 9e-12
Identities = 29/85 (34%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = -2
Query: 547 GMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKI 368
G + G+ + V S+ D+DIR L+ + +++GG T+ G +R+ +E+ + P ++++
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 367 KII---APPERKYSVWIGGSILASL 302
K+I + E++++ WIGGSILASL
Sbjct: 206 KLISNNSSVEKRFNPWIGGSILASL 230
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Frame = -2
Query: 541 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST----- 377
E + + +S++ C +D RK L N V+ GGT M PG R+ +EI L S
Sbjct: 54 EEKSLATALLDSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDK 113
Query: 376 --IK-IKIIAPP-ERKYSVWIGGSILASLSTFQQMWISKEEYDE 257
IK +K+ PP + W+GG+I SL ++E Y +
Sbjct: 114 LFIKTVKMHQPPVNANITAWLGGAIFGSLEVLADRSTTRERYQQ 157
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/61 (44%), Positives = 37/61 (60%)
Frame = -2
Query: 730 EIVRDIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSF 551
+IV DIKEK+ Y++ D +E+ + L K Y LPDGQ+I+IG E E LF+P
Sbjct: 838 QIVNDIKEKICYLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYECISSMEPLFRPDL 897
Query: 550 L 548
L
Sbjct: 898 L 898
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = -2
Query: 736 EREIVRDIKEKLXYVALDFEQEM 668
EREIVRDIKEKL YVALDF QE+
Sbjct: 84 EREIVRDIKEKLCYVALDFYQEI 106
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = -2
Query: 529 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPG 425
I E + +I K D+D+R+ LY+N V+SGG+T++ G
Sbjct: 257 IIEVLAFAIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 32.7 bits (71), Expect = 0.32
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -2
Query: 577 PEALFQPSFLGMESCGIHETV 515
PE +FQPS LG+E GI ET+
Sbjct: 3 PEIIFQPSMLGLEQAGITETM 23
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 31.9 bits (69), Expect = 0.56
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = -1
Query: 533 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRS 354
R P+DR + HH RR H +HR H R++R+ +G+ L+ +D
Sbjct: 830 RPPQDRHRRHHHRRRHHN----NKHRKHSREHSRRRHQRKHHKGNDAQETLEEIFED--D 883
Query: 353 PREEVLRMDRWIHPG 309
R+E +D +++ G
Sbjct: 884 ARDEKENVDEFVNGG 898
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -1
Query: 557 FLPGYGIVRHP-RDRVQLHHEV-RRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRA 384
F+ G G++ H + Q+ E R + G +HRH R +HH ++ R+ + + A
Sbjct: 894 FVNGGGMMEHELQSDSQISQETGARENDPGKKHKHRHRRHHHHRRQHNRKIKKHRRKHSA 953
Query: 383 LDHQ 372
H+
Sbjct: 954 RKHE 957
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 315 MDPPIHTEYFLSGGAMILILMVEGARAVISFCILSAIPGYMV-VPPD 452
+DPP+ +Y L+GG ++ ++ FCI G++V PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCIFQ---GFVVPTPPE 801
>SB_7681| Best HMM Match : Annexin (HMM E-Value=0)
Length = 426
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = -1
Query: 530 HPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDH--R 357
HP ++ HHE R P H H P ++ E P DH++++
Sbjct: 316 HPPEQ---HHEEEERGVHPPGEHHEEEERGAHPPGQDLEEEERGAHPPGQDHEEEERGAH 372
Query: 356 SPREEVLRMDRWIHP 312
P + +R +HP
Sbjct: 373 PPEQHHEEEERGVHP 387
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 463 NTVMSGGTTMYPGIADRMQKEITALAP 383
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Frame = -1
Query: 533 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYR--RQDAEGDHRPR--ALDHQDQ 366
RH R R + R RH RH H R++ R + R R H+
Sbjct: 23 RHERSRHETRQHERSRHKTSRHESSRHKTSRHERSRHKTSRHETSRHERSRHETRQHERS 82
Query: 365 DHRSPREEVLRMDRWIH 315
H++ R E R ++ H
Sbjct: 83 RHKTSRHETSRHEKSRH 99
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = -1
Query: 578 SRGSLPAFLPGYGIVRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 399
+R ++P LPG H R R HH ++H ++ HH Q +
Sbjct: 930 ARPNMPGTLPGNYPESHKRHRHSHHHH------------YQHYQYNHHHDHQSHQHHDSH 977
Query: 398 HRPRALDHQ 372
H LDH+
Sbjct: 978 HHREVLDHK 986
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 28.3 bits (60), Expect = 6.9
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = -1
Query: 536 VRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVP-RYRRQDAEGDHRPRALDHQDQD- 363
V HPR V +H HP V HR +H + RQDA DH + + H QD
Sbjct: 606 VVHPRRDV-VHPRQDVVHPRQDVDHHRQDVDHHRQDVDHHRQDA--DHHRQDVVHPRQDV 662
Query: 362 -HRSPREEVLRMDRWIHPGFPVHLPADVD 279
HR + R D H VH D D
Sbjct: 663 VHRRQDADHRRQDADHHRQDVVHPRQDAD 691
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = -1
Query: 527 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHR 357
PRDR + E RRR P R+ R + Y PR RR+ R R D R
Sbjct: 854 PRDRRRRSPEHRRRREASPPRRDR--KRYDSPPRRRRRSPSPPPRRRRRDSYSPSRR 908
>SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 466 ANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPE 347
AN V+ + + +R+ KE+ L +K KIIAPPE
Sbjct: 44 ANPVIHPARKVPVSLGERLDKELNRLTELGIVKEKIIAPPE 84
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/73 (24%), Positives = 27/73 (36%)
Frame = -1
Query: 533 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRS 354
RH R R + R RH RH H R++ E R+ H+ + H
Sbjct: 63 RHERSRHETRQHERSRHKTSRHESSRHKTSRHGRSRHKTSRHETSRHERS-RHETRQHER 121
Query: 353 PREEVLRMDRWIH 315
R + R ++ H
Sbjct: 122 SRHKTSRHEKSRH 134
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 712 KEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPE 572
+EK+ L+ E E A + LEK +L + +G+ER RC +
Sbjct: 2983 REKIVTSDLESELETERALQANELEKQNKLLEKLSADLGHERSRCED 3029
>SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Frame = -1
Query: 506 HHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDH--RSPREEVLR 333
HHE R P + H H P ++ E P H++++ P E
Sbjct: 154 HHEEEERGVHPPGQHHEEEERGVHPPGQHHEEEERGVHPPGQHHEEEERGVHPPEEHHEE 213
Query: 332 MDRWIHP 312
+R +HP
Sbjct: 214 EERGVHP 220
>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
Length = 647
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = -1
Query: 536 VRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHR 357
++HP ++ H + ++ P + HHVP + +A G+ R Q+ D+
Sbjct: 550 IQHPVEKAIQHAQEKKYQP----ELEKKTIKSHHVPGQDKTEARGEERIAVWSTQNGDYY 605
Query: 356 SPREE 342
R+E
Sbjct: 606 DQRDE 610
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,373,268
Number of Sequences: 59808
Number of extensions: 436011
Number of successful extensions: 1409
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -