Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L06
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 103 3e-23
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 80 3e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 79 4e-16
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 78 9e-16
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 67 2e-12
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 58 1e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 57 2e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 57 2e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 56 4e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 55 7e-09
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 54 1e-08
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 1e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 54 2e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 53 3e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 51 1e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 48 8e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 48 1e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 48 1e-06
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 47 2e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 47 2e-06
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 47 2e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 41 2e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 40 2e-04
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 33 0.024
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 31 0.13
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.22
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 27 1.6
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 4.8
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 26 4.8
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 6.3
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 25 8.4
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 8.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 103 bits (246), Expect = 3e-23
Identities = 42/74 (56%), Positives = 61/74 (82%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
+RG+DV GI +V N+D+P ++EDY+HRIGRTGR+ +KGT+Y +FT N++QA++LVS+L
Sbjct: 430 SRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILS 489
Query: 411 EANQMISPQLQSMA 370
EA Q I P+L+ MA
Sbjct: 490 EAKQDIDPKLEEMA 503
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 79.8 bits (188), Expect = 3e-16
Identities = 36/74 (48%), Positives = 51/74 (68%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
+RGLD+ + +VIN+D P +DY+HRIGRTGR+ + G + AFF +N AK+L+ +LQ
Sbjct: 491 SRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQ 550
Query: 411 EANQMISPQLQSMA 370
EANQ L +MA
Sbjct: 551 EANQECPSFLIAMA 564
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 79.4 bits (187), Expect = 4e-16
Identities = 35/66 (53%), Positives = 49/66 (74%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLD+ ++ VIN +P + EDY+HRIGRTGR+ +KGT+ FFTP + A +LV+VL+
Sbjct: 477 ARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLR 536
Query: 411 EANQMI 394
+A Q I
Sbjct: 537 QAKQDI 542
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 78.2 bits (184), Expect = 9e-16
Identities = 32/76 (42%), Positives = 49/76 (64%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLDV ++ V+N+D PN EDY+HR+GRTGR+ G + F TP + A D+ L+
Sbjct: 729 ARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALK 788
Query: 411 EANQMISPQLQSMADR 364
+ Q + +LQ++A +
Sbjct: 789 MSKQPVPKELQTLASQ 804
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 67.3 bits (157), Expect = 2e-12
Identities = 29/62 (46%), Positives = 40/62 (64%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARG+D G+K VINFD+P S YIHRIGRTGR+ + G + FFT + K + V++
Sbjct: 349 ARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMR 408
Query: 411 EA 406
+
Sbjct: 409 SS 410
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 57.6 bits (133), Expect = 1e-09
Identities = 26/55 (47%), Positives = 36/55 (65%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDL 427
ARG+DV + VIN+D P + E+YIHRIGR+GR KG + F T + R +D+
Sbjct: 321 ARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDI 375
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.2 bits (132), Expect = 2e-09
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 448
ARGLD + + V+NFD P++++ YIHRIGRT R+ GT+ +F P +
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKS 434
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/55 (47%), Positives = 35/55 (63%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDL 427
ARG+DV + VIN+D P + E+YIHRIGR GR KG S F T + R +++
Sbjct: 319 ARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREI 373
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 56.0 bits (129), Expect = 4e-09
Identities = 23/62 (37%), Positives = 36/62 (58%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQE 409
RG+D++ + VIN+D P+S + Y+HR+GR GR +KG + F + Q D + E
Sbjct: 357 RGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFE 416
Query: 408 AN 403
N
Sbjct: 417 VN 418
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 55.2 bits (127), Expect = 7e-09
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDL-VSVLQ 412
RG+D+ + V+N++ S EDY HRIGRTGR+ GT+ F P ++ DL V + +
Sbjct: 578 RGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSR 637
Query: 411 EANQMISPQLQS 376
A I +L++
Sbjct: 638 SAKAHIPDELRN 649
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 54.4 bits (125), Expect = 1e-08
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 457
RG+D+ + VINFD+P ++E Y+HRIGR+GR +G + +F +
Sbjct: 343 RGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFIS 386
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 54.4 bits (125), Expect = 1e-08
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 457
+RGLD+ ++ VINFD P +DYIHR+GRT R+ G S + T
Sbjct: 319 SRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVT 363
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 54.0 bits (124), Expect = 2e-08
Identities = 27/68 (39%), Positives = 38/68 (55%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLD+ + V+ +D P S++DY+HRIGRT R+ G + F P S L S +
Sbjct: 507 ARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSV- 565
Query: 411 EANQMISP 388
AN + P
Sbjct: 566 SANILEQP 573
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 53.2 bits (122), Expect = 3e-08
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR-SKSKGTSYAFFTPS 451
ARGLD+ + +++ +D P+ DYIHR+GRT R +K G S F PS
Sbjct: 397 ARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPS 444
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 51.2 bits (117), Expect = 1e-07
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 457
ARGLD+ + VIN+D P S+ YIHR+GRT R+ G S A T
Sbjct: 346 ARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVT 390
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 48.4 bits (110), Expect = 8e-07
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSY 469
ARG+D I V+ P++++DYIHRIGRTGR+ G +Y
Sbjct: 354 ARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAY 394
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDL 427
ARG+D+ + +VI++ P++++ Y+HR GRT R+ G S P Q K L
Sbjct: 450 ARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKELSQLKRL 504
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/57 (40%), Positives = 28/57 (49%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVS 421
ARGLD + +VI D P + YIHR+GRT R G + PS K L S
Sbjct: 346 ARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLKRLES 402
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 47.2 bits (107), Expect = 2e-06
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARG+DV + VIN+D P S Y+HRIGRT R+ +G ++ LV L+
Sbjct: 498 ARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHEGHHFSKLVKQLR 557
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 46.8 bits (106), Expect = 2e-06
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 478
+RG+D+ GI+ VIN++ P + E Y+HR+GRT R+ G
Sbjct: 565 SRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSG 602
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 46.8 bits (106), Expect = 2e-06
Identities = 22/75 (29%), Positives = 41/75 (54%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
+RG+D+ + VIN+D+P + ++HR+GRT R+ G +Y+ ++ DL L
Sbjct: 407 SRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLN 466
Query: 411 EANQMISPQLQSMAD 367
S Q+++ +D
Sbjct: 467 RPLVTSSKQVKTDSD 481
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSS------EDYIHRIGRTGRSKSKGTSYAF 463
ARG+DV + V+N+D P + Y+HRIGRTGR G S F
Sbjct: 413 ARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 461
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSV 418
+RGLD+ + +V+ D P + + HR GR GR+ G + + ++L+ V
Sbjct: 320 SRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLNDGREEEYEELLRV 377
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 33.5 bits (73), Expect = 0.024
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -3
Query: 585 GLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNS----RQAKDLVSV 418
GLD+ + +I +D S + R+GRTGR K KG Y T +AKD
Sbjct: 505 GLDIGEVDMIICYDASASPIRMLQRMGRTGR-KRKGYIYMLLTRGKEEAKWERAKDAYRT 563
Query: 417 LQE 409
LQ+
Sbjct: 564 LQD 566
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 31.1 bits (67), Expect = 0.13
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 585 GLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS 484
GLD+ +I +D +S I R+GRTGR KS
Sbjct: 544 GLDIGDTDMIICYDASSSPIRTIQRMGRTGRKKS 577
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 30.3 bits (65), Expect = 0.22
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 540 PNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQMISP 388
P SS+ + I K + F PSNS KDL +V ++ N++ SP
Sbjct: 246 PLSSQQILPAISNNTSEKPDSNNCGFLLPSNSTSIKDLKNV-KKGNRLNSP 295
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 160 HNIYLYYEDSPS*KCQQKSYLIVVKSFVTTAPPLATLA 273
H+IY+ S C + YL ++ + V TA PL+ +A
Sbjct: 330 HDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIA 367
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 573 DGIKYVINFDYPNSS--EDYIHRIGRTGRSKSKGTSYAFFTPSNSRQ 439
DG K+V++ DYP+ + ++ H + + SK ++ + SN ++
Sbjct: 97 DGAKFVVSTDYPDPALIDNLEHNVKQYAEIASKISAVGYLWGSNIKE 143
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 523 LHPSY-WENWTFKIKRNIICFLYPFKFP 443
LHP Y + WT ++ RN I YP+ P
Sbjct: 109 LHPDYEYILWTDEMSRNFIADNYPWFLP 136
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 582 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTS 472
L +D + I YP S EDY + R SK S
Sbjct: 146 LIIDNLSMPIQLAYPTSPEDYAYLRLRRNTSKKSSLS 182
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 494 VQNQKEHHMLSLPLQIPVKPKIWYLF 417
V ++ H++ SL +PV+P W++F
Sbjct: 531 VSHELIHNLYSLMCLVPVEPLRWWVF 556
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 486 ILNVQFSQYDGCNPPTNLDNQNLLHI 563
+++ + ++YDG P T NQN L I
Sbjct: 27 LISQRGNEYDGITPATKEKNQNKLEI 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,203
Number of Sequences: 5004
Number of extensions: 43665
Number of successful extensions: 125
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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