Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L06
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       71   7e-15
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.43 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.43 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.9  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   9.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 71.3 bits (167), Expect = 7e-15
 Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
 Frame = -3

Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAK-DLVSVL 415
           ARGLD+  + +VIN+D P   ++Y+HRIGRTGR  ++G + +FF P      + DLV +L
Sbjct: 512 ARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAPLRGDLVRIL 571

Query: 414 QEANQMI 394
           ++ANQ +
Sbjct: 572 KQANQSV 578


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 486 ILNVQFSQYDGCNPPTNLDNQNLLHI 563
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 486 ILNVQFSQYDGCNPPTNLDNQNLLHI 563
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 342 TRRHHHRNGRPSTAVVG*SS 401
           T  HHH+NG   +++V  +S
Sbjct: 170 TLGHHHQNGATPSSLVSSAS 189


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 354 HHRNGRPSTAVV 389
           HH N RP T++V
Sbjct: 121 HHDNARPHTSLV 132


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 354 HHRNGRPSTAVV 389
           HH N RP T++V
Sbjct: 243 HHDNARPHTSLV 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,218
Number of Sequences: 438
Number of extensions: 2987
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)