Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L06
(596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 108 2e-24
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 97 1e-20
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 95 4e-20
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 94 6e-20
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 94 6e-20
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 94 6e-20
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 90 1e-18
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 84 6e-17
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 84 8e-17
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 83 1e-16
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 83 1e-16
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 81 4e-16
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 79 3e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 75 3e-14
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 65 4e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 64 9e-11
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 63 1e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 62 3e-10
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 60 1e-09
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 59 2e-09
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 59 2e-09
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 58 3e-09
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 58 4e-09
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 58 6e-09
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 58 6e-09
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 57 1e-08
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 57 1e-08
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 54 1e-07
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 53 1e-07
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 53 1e-07
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 53 1e-07
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 53 1e-07
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 53 1e-07
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 53 1e-07
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 53 1e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 52 4e-07
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 52 4e-07
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 52 4e-07
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 52 4e-07
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 52 4e-07
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 51 5e-07
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 50 9e-07
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 50 9e-07
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 50 9e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 50 1e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 50 2e-06
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 49 2e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 49 2e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 48 5e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 47 8e-06
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 47 1e-05
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 46 1e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 46 3e-05
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 45 4e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 44 6e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 44 6e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 43 1e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 2e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 42 2e-04
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 42 2e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 41 5e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 41 5e-04
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 36 0.016
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 34 0.063
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 31 0.58
At1g67370.1 68414.m07669 meiotic asynaptic mutant 1 (ASY1) ident... 29 3.1
At4g02000.1 68417.m00269 expressed protein low similarity to zin... 28 4.1
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 28 4.1
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 28 5.4
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 27 7.2
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 108 bits (260), Expect = 2e-24
Identities = 47/73 (64%), Positives = 61/73 (83%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLDV +KYVIN+D+P S EDY+HRIGRTGR+ +KGT+Y FFT +N+R AK+L ++LQ
Sbjct: 405 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQ 464
Query: 411 EANQMISPQLQSM 373
EA Q +SP+L SM
Sbjct: 465 EAGQKVSPELASM 477
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 96.7 bits (230), Expect = 1e-20
Identities = 41/73 (56%), Positives = 58/73 (79%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLDV IK V+N+D+PN+ EDYIHRIGRTGR+ +KG ++ FFT N++ A++LV +LQ
Sbjct: 471 ARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQ 530
Query: 411 EANQMISPQLQSM 373
EA Q++ P L ++
Sbjct: 531 EAGQVVPPTLSAL 543
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 94.7 bits (225), Expect = 4e-20
Identities = 39/76 (51%), Positives = 56/76 (73%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLDV I+ V+N+D+PN EDY+HRIGRTGR+ + G +Y FF +++ A DL+ +L+
Sbjct: 534 ARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILE 593
Query: 411 EANQMISPQLQSMADR 364
ANQ + PQ++ MA R
Sbjct: 594 GANQKVPPQVREMATR 609
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 94.3 bits (224), Expect = 6e-20
Identities = 39/76 (51%), Positives = 56/76 (73%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLDV I+ V+N+D+PN EDY+HRIGRTGR+ + G ++ FF +S+ A DL+ +L+
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILE 522
Query: 411 EANQMISPQLQSMADR 364
ANQ + PQ++ MA R
Sbjct: 523 GANQRVPPQIREMATR 538
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 94.3 bits (224), Expect = 6e-20
Identities = 39/76 (51%), Positives = 56/76 (73%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLDV I+ V+N+D+PN EDY+HRIGRTGR+ + G ++ FF +S+ A DL+ +L+
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILE 522
Query: 411 EANQMISPQLQSMADR 364
ANQ + PQ++ MA R
Sbjct: 523 GANQRVPPQIREMATR 538
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 94.3 bits (224), Expect = 6e-20
Identities = 39/76 (51%), Positives = 56/76 (73%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLDV I+ V+N+D+PN EDY+HRIGRTGR+ + G ++ FF +S+ A DL+ +L+
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILE 522
Query: 411 EANQMISPQLQSMADR 364
ANQ + PQ++ MA R
Sbjct: 523 GANQRVPPQIREMATR 538
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 89.8 bits (213), Expect = 1e-18
Identities = 38/76 (50%), Positives = 55/76 (72%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLD+ I+ VIN+D+P EDY+HRIGRTGR+ + G ++ FFT + + A DL+ VL+
Sbjct: 740 ARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLE 799
Query: 411 EANQMISPQLQSMADR 364
ANQ + PQ++ +A R
Sbjct: 800 GANQQVPPQVRDIAMR 815
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 84.2 bits (199), Expect = 6e-17
Identities = 37/76 (48%), Positives = 51/76 (67%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLD+ + +V+NFD PN +DY+HRIGRTGR+ + G + AFF +N+ AK L ++Q
Sbjct: 466 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQ 525
Query: 411 EANQMISPQLQSMADR 364
EANQ + L A R
Sbjct: 526 EANQEVPDWLTRYASR 541
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 83.8 bits (198), Expect = 8e-17
Identities = 36/70 (51%), Positives = 52/70 (74%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLD+ ++ VIN+ +P ++EDY+HRIGRTGR+ KG ++ FFTP N A +LV+VL+
Sbjct: 427 ARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLR 486
Query: 411 EANQMISPQL 382
EA Q++ L
Sbjct: 487 EAGQVVPADL 496
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 83.0 bits (196), Expect = 1e-16
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLD+ + +V+NFD PN +DY+HRIGRTGR+ G + AFF +N++ A+ L ++Q
Sbjct: 469 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQ 528
Query: 411 EANQMISPQLQSMADR 364
EANQ + L A R
Sbjct: 529 EANQEVPEWLTRYASR 544
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 83.0 bits (196), Expect = 1e-16
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLD+ + +V+NFD PN +DY+HRIGRTGR+ G + AFF +N++ A+ L ++Q
Sbjct: 469 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQ 528
Query: 411 EANQMISPQLQSMADR 364
EANQ + L A R
Sbjct: 529 EANQEVPEWLTRYASR 544
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 81.4 bits (192), Expect = 4e-16
Identities = 36/76 (47%), Positives = 49/76 (64%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLD+ + +V+NFD PN +DY+HRIGRTGR+ G + AFF N+ A+ L ++Q
Sbjct: 479 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQ 538
Query: 411 EANQMISPQLQSMADR 364
EANQ + L A R
Sbjct: 539 EANQEVPEWLTRYASR 554
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 78.6 bits (185), Expect = 3e-15
Identities = 34/75 (45%), Positives = 51/75 (68%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLDV ++ V+NFD PN EDY+HR+GRTGR+ KG + F + +++ A DLV L+
Sbjct: 837 ARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALE 896
Query: 411 EANQMISPQLQSMAD 367
+ Q + L+++AD
Sbjct: 897 LSEQPVPDDLKALAD 911
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 75.4 bits (177), Expect = 3e-14
Identities = 32/75 (42%), Positives = 51/75 (68%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLDV ++ V+NFD PN EDY+HR+GRTGR+ KG + F + +++ A DLV L+
Sbjct: 675 ARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALE 734
Query: 411 EANQMISPQLQSMAD 367
+ Q + ++++A+
Sbjct: 735 LSEQPVPDDVKAVAE 749
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 64.9 bits (151), Expect = 4e-11
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA-KDLVSVL 415
++GLD I++VIN+D P E+Y+HRIGRTGR G + F + S DL +L
Sbjct: 458 SKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 517
Query: 414 QEANQMISPQLQSMAD 367
QEA Q I P L + D
Sbjct: 518 QEAKQRIPPVLAELND 533
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 63.7 bits (148), Expect = 9e-11
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSR-QAKDLVSVL 415
++GLD I++VIN+D P E+Y+HRIGRTGR G + F + S DL +L
Sbjct: 409 SKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLL 468
Query: 414 QEANQMISPQLQSM 373
QEA Q I P L +
Sbjct: 469 QEAKQRIPPVLAEL 482
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 63.3 bits (147), Expect = 1e-10
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSK-GTSYAFFTPSNSRQAKDLVSVL 415
ARGLD+ +K V+N+D + ++HRIGRTGR+ + G +Y T +R A +LV+ L
Sbjct: 534 ARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSL 593
Query: 414 QEANQMISPQLQSMA 370
A Q + P+L +A
Sbjct: 594 VAAGQNVPPELTDLA 608
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/69 (39%), Positives = 42/69 (60%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQE 409
RG+D+ + +VIN+D P E Y HRIGRTGR+ G + +F T ++ DL +L +
Sbjct: 638 RGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQ 697
Query: 408 ANQMISPQL 382
+N + P+L
Sbjct: 698 SNSAVPPEL 706
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/55 (47%), Positives = 34/55 (61%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDL 427
ARG+DV + VINFD P E+Y+HRIGR+GR KG + F T + R D+
Sbjct: 341 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADI 395
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/73 (34%), Positives = 44/73 (60%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARG+D GI VIN+D+P+S+ YIHRIGR+GR+ G + F+T + +++ + +
Sbjct: 441 ARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMM 500
Query: 411 EANQMISPQLQSM 373
+ + + S+
Sbjct: 501 SSGCEVPSWIMSL 513
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/55 (47%), Positives = 36/55 (65%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDL 427
ARG+DV + +VIN+D PN+ E YIHRIGR GR +G + F S+ + KD+
Sbjct: 322 ARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDI 376
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 58.4 bits (135), Expect = 3e-09
Identities = 26/55 (47%), Positives = 34/55 (61%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDL 427
ARG+DV + VINFD P E+Y+HRIGR+GR KG + F T + R D+
Sbjct: 339 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 393
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 58.0 bits (134), Expect = 4e-09
Identities = 26/55 (47%), Positives = 34/55 (61%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDL 427
ARG+DV + VINFD P E+Y+HRIGR+GR KG + F T + R D+
Sbjct: 339 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDI 393
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 57.6 bits (133), Expect = 6e-09
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVL 415
RG+D + VINFD P S YIHRIGRTGR+ S G+S + +P +D+ S L
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFL 455
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 57.6 bits (133), Expect = 6e-09
Identities = 28/68 (41%), Positives = 44/68 (64%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARG+DV + +VI D+ +S+ D++HRIGRT R+ GT + +T +N +DLV ++
Sbjct: 484 ARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTEAN----RDLVEAIR 539
Query: 411 EANQMISP 388
EA +M P
Sbjct: 540 EAVKMGQP 547
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 56.8 bits (131), Expect = 1e-08
Identities = 22/53 (41%), Positives = 36/53 (67%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAK 433
ARGLDV + +I+++ PN++E ++HR GRTGR+ KG++ ++ SR K
Sbjct: 409 ARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVK 461
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/73 (41%), Positives = 41/73 (56%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARG+DV + VIN+D PN+ E YIHRIGR+GR KG + F D + +L+
Sbjct: 335 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV-------KSDDIKILR 387
Query: 411 EANQMISPQLQSM 373
+ Q S Q+ M
Sbjct: 388 DIEQYYSTQIDEM 400
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNS 445
ARGLD+ GI YV+ +D P + +IHR+GRT R + +G + F P +
Sbjct: 330 ARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPKET 378
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
+RGLD+ + VI+++ PN E ++HR GRTGR+ +G++ T S R + L +
Sbjct: 411 SRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVG 470
Query: 411 EANQMISP 388
+ ISP
Sbjct: 471 CHFEFISP 478
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 53.2 bits (122), Expect = 1e-07
Identities = 20/55 (36%), Positives = 36/55 (65%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLV 424
RG+D++ + VIN+D P+S++ Y+HR+GR GR +KG + F ++ + + V
Sbjct: 350 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQV 404
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 53.2 bits (122), Expect = 1e-07
Identities = 20/55 (36%), Positives = 36/55 (65%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLV 424
RG+D++ + VIN+D P+S++ Y+HR+GR GR +KG + F ++ + + V
Sbjct: 267 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQV 321
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 53.2 bits (122), Expect = 1e-07
Identities = 20/55 (36%), Positives = 36/55 (65%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLV 424
RG+D++ + VIN+D P+S++ Y+HR+GR GR +KG + F ++ + + V
Sbjct: 350 RGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQV 404
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAK 433
ARGLDV + VI+++ PN++E ++HR GRTGR+ KG++ +R K
Sbjct: 421 ARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVK 473
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQE 409
RG+D+ ++ VI FD P++ ++YIH IGR R KGT+ F + DLV+ L+
Sbjct: 420 RGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKS 479
Query: 408 ANQMISPQLQSMADR 364
+ I +L ++ R
Sbjct: 480 SGAAIPKELINLTSR 494
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQE 409
RG+D+ ++ VI FD P++ ++YIH IGR R KGT+ F + DLV+ L+
Sbjct: 283 RGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKS 342
Query: 408 ANQMISPQLQSMADR 364
+ I +L ++ R
Sbjct: 343 SGAAIPKELINLTSR 357
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 478
+RGLD+ + VIN+D P +S+DYIHR+GRT R+ G
Sbjct: 321 SRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSG 358
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 51.6 bits (118), Expect = 4e-07
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -3
Query: 591 ARGLDVD-GIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVL 415
ARGLD D + +V+ D P YIHR+GRT R ++G S F TPS + ++ L
Sbjct: 378 ARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEK----MIEKL 433
Query: 414 QEA 406
QEA
Sbjct: 434 QEA 436
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 51.6 bits (118), Expect = 4e-07
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 493
RG+D+ + VINFD+P +SE Y+HR+GR+GR
Sbjct: 423 RGIDIQAVNVVINFDFPRTSESYLHRVGRSGR 454
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 51.6 bits (118), Expect = 4e-07
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 493
RG+D+ + VINFD+P +SE Y+HR+GR+GR
Sbjct: 423 RGIDIQAVNVVINFDFPRTSESYLHRVGRSGR 454
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 51.6 bits (118), Expect = 4e-07
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 493
RG+D+ + VINFD+P +SE Y+HR+GR+GR
Sbjct: 453 RGIDIQAVNVVINFDFPRTSESYLHRVGRSGR 484
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 51.2 bits (117), Expect = 5e-07
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 448
ARGLD+ G++ VIN+ P + Y+HR+GRT R+ +G + F T S+
Sbjct: 473 ARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSD 520
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 50.4 bits (115), Expect = 9e-07
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 457
RG+D+ + VINFD+P ++E Y+HR+GR+GR G + T
Sbjct: 430 RGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLIT 473
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 50.4 bits (115), Expect = 9e-07
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 457
RG+D+ + VINFD+P ++E Y+HR+GR+GR G + T
Sbjct: 430 RGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLIT 473
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 50.4 bits (115), Expect = 9e-07
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDL 427
ARG+D+ + VIN+D+P + ++HR+GR R+ G +Y+F TP + DL
Sbjct: 332 ARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDL 386
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDL 427
ARGLD ++ +I +D P + +Y+HR+GRT R KG + F P K+L
Sbjct: 410 ARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQPIEIDYLKEL 464
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/49 (38%), Positives = 33/49 (67%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNS 445
ARG+D+ ++ +I++ P+S+E Y+HR GRT R+ + G S A P+ +
Sbjct: 563 ARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNET 611
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/62 (43%), Positives = 40/62 (64%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 412
ARGLD+D + +V+ FD+P +S DY+HR GRT R +KG T SR+ + L + ++
Sbjct: 433 ARGLDLD-VDHVVMFDFPKNSIDYLHRTGRTARMGAKGK----VTSLVSRKDQMLAARIE 487
Query: 411 EA 406
EA
Sbjct: 488 EA 489
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 448
+RGLD+ + VIN+D P DY+HR+GRT R+ G + + T ++
Sbjct: 363 SRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETD 410
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK-SKGTSYAFFTP 454
ARGLD + +++ +D P++ DYIHR+GRT R + +KG + TP
Sbjct: 461 ARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTP 507
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 47.2 bits (107), Expect = 8e-06
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK-SKGTSYAFFTPSNSRQAKDL---- 427
ARGLD+ + ++I +D P+ +YIHR+GRT R + +KG + P + + L
Sbjct: 395 ARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFIRYLKAAK 454
Query: 426 VSVLQ-EANQMISPQLQSMADRC 361
V V + E N+ +QS ++C
Sbjct: 455 VPVKELEFNEKRLSNVQSALEKC 477
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR-SKSKGTSYAF 463
+RG+D G+ +V+ FD+P +Y+ R+GRT R ++ KG ++ F
Sbjct: 705 SRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIF 748
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 46.4 bits (105), Expect = 1e-05
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 454
ARGLD+ GI YV+ +D P + HR GRT R +G + F P
Sbjct: 339 ARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLP 384
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = -3
Query: 588 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLV 424
RG+DV G+ VIN+D P ++ +IHR GRT R+ G + + R+ L+
Sbjct: 390 RGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLL 444
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNS 445
ARGLD++ ++ +I + P E YIHR GRTGR+ + G + + S
Sbjct: 407 ARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLYDSRKS 455
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 44.4 bits (100), Expect = 6e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 454
ARG+D + V+ P+ E YIHR+GRTGR +G P
Sbjct: 399 ARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAP 444
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 44.4 bits (100), Expect = 6e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 454
ARG+D + V+ P+ E YIHR+GRTGR +G P
Sbjct: 701 ARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAP 746
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGT 475
ARGLDV V+N + P + Y HR GRTGR KGT
Sbjct: 468 ARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGT 506
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 454
ARG+D + V+ P E YIHR+GRTGR +G P
Sbjct: 373 ARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAP 418
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 493
ARG+D+ ++ NFD P + DY+HR GR GR
Sbjct: 402 ARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGR 434
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 493
ARG+D+ ++ NFD P + DY+HR GR GR
Sbjct: 245 ARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGR 277
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 454
ARG++ + VI P+ E YIHR+GRTGR G P
Sbjct: 695 ARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAP 740
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 454
ARG++ + VI P+ E YIHR+GRTGR G P
Sbjct: 648 ARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAP 693
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 36.3 bits (80), Expect = 0.016
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 585 GLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 460
GLD + VI+F P S E+Y+ IGR GR + F+
Sbjct: 549 GLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFY 590
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.3 bits (75), Expect = 0.063
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Frame = -3
Query: 591 ARGLDVDGIKYVINFDYPNSSED-------YIHRIGRTGRSKSKGTSY 469
ARG D + V+N++ P E Y+HR+GR GR KG +
Sbjct: 401 ARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVF 448
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 585 GLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLV 424
GLD+ VI +D P + +I GR++ + YAF S + + DL+
Sbjct: 584 GLDIQTCCLVIRYDLPETVTSFIQ---SRGRARMPQSEYAFLVDSGNEKEMDLI 634
>At1g67370.1 68414.m07669 meiotic asynaptic mutant 1 (ASY1)
identical to meiotic asynaptic mutant 1 [Arabidopsis
thaliana] GI:7939627; contains Pfam profiles PF02301:
DNA-binding HORMA domain, PF04433: SWIRM domain
Length = 596
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -3
Query: 564 KYVINFDYPNS-SEDYIHRIGRTGRSKSKG--TSYAFFTPSNSRQA 436
+Y +F Y +S S+D + I RTG K+ G S A TP+ R +
Sbjct: 104 EYSFSFSYSDSDSQDVMMNINRTGNKKNGGIFNSTADITPNQMRSS 149
>At4g02000.1 68417.m00269 expressed protein low similarity to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 314
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 318 LRRICSCSTRRHHHRNGRP 374
LRRICS R HHRN P
Sbjct: 121 LRRICSSCFRMTHHRNSCP 139
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 585 GLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS 484
GLD+ + VI FD S I R+GRTGR +
Sbjct: 540 GLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNN 573
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from [Homo
sapiens]; contains Pfam PF02135: TAZ zinc finger profile;
contains Pfam PF00569: Zinc finger, ZZ type domain;
identical to histone acetyltransferase HAC4 (GI:14794966)
{Arabidopsis thaliana}
Length = 1456
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 207 TKILFNSRQIVCNHCPPFGYSCQNCFRV*KSR 302
T ++ + + VCNHC F C C+ V ++R
Sbjct: 1170 TTLMVSGNRWVCNHCKNF-QICDKCYEVEQNR 1200
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 565 QICNKF*LSKFVGGLHPSYWENW 497
QI KF S F+ + SYW+ W
Sbjct: 278 QISEKFQFSAFIENIRLSYWKGW 300
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,894,148
Number of Sequences: 28952
Number of extensions: 221733
Number of successful extensions: 573
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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