Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L05
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   134   2e-32
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   132   6e-32
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    31   0.21 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.38 
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    27   2.6  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   3.5  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    27   3.5  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   4.6  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    26   6.1  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   6.1  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   8.1  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   8.1  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  134 bits (323), Expect = 2e-32
 Identities = 69/132 (52%), Positives = 80/132 (60%)
 Frame = -3

Query: 648 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 469
           KVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP M
Sbjct: 3   KVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNM 62

Query: 468 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRL 289
            +C+LGD    D AK   V  M                          ASE LIKQIPRL
Sbjct: 63  SICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRL 122

Query: 288 LGPGLNKAGKXP 253
           LGPGL+KAGK P
Sbjct: 123 LGPGLSKAGKFP 134



 Score =   99 bits (238), Expect = 3e-22
 Identities = 46/69 (66%), Positives = 57/69 (82%)
 Frame = -2

Query: 217 RLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 38
           ++++ K TIKFQ+KKVLCL VAVGHVDM  ++LA N+ L+INFLVSLLKK WQN+ SL +
Sbjct: 146 KIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVI 205

Query: 37  KSTMGPPQR 11
           KSTMG P R
Sbjct: 206 KSTMGKPYR 214


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  132 bits (318), Expect = 6e-32
 Identities = 69/132 (52%), Positives = 81/132 (61%)
 Frame = -3

Query: 648 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 469
           KVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP M
Sbjct: 3   KVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNM 62

Query: 468 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRL 289
            +C+LGD    D AK   V  M                          ASE LIKQIPRL
Sbjct: 63  AICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRL 122

Query: 288 LGPGLNKAGKXP 253
           LGPGL+KAGK P
Sbjct: 123 LGPGLSKAGKFP 134



 Score = 96.3 bits (229), Expect = 4e-21
 Identities = 43/69 (62%), Positives = 56/69 (81%)
 Frame = -2

Query: 217 RLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 38
           ++ + K TIKFQ+KKVLCL VAVGHV+M+ ++L  N+ L++NFLVSLLKK WQN+ SL +
Sbjct: 146 KITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVV 205

Query: 37  KSTMGPPQR 11
           KSTMG P R
Sbjct: 206 KSTMGKPHR 214


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -2

Query: 223 RRRLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVS-LLKKHWQNVRS 47
           +R ++   G   F         +  GHV  T  ELA+NV   + F+   ++    + + S
Sbjct: 179 KREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIAS 238

Query: 46  LHMKST 29
           +H+K++
Sbjct: 239 IHLKTS 244


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = -3

Query: 669  LTNKMSXKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 505
            +T+K++  V ++  Y    C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 920  VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -2

Query: 163  LSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKKHW 62
            LS+A+G+++  P  L      N H+S+  L  L+K H+
Sbjct: 2706 LSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKNHY 2743


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +3

Query: 36  FICNDRTFCQCFLSSDTRKLMERCTF*ASSSGVMSTWPTATERHNTFFIWNLMVPLXFIN 215
           +  + R +  C   + T+K +   T   S+SG++ T   ++   N  F+W+   P   ++
Sbjct: 471 YYLDTRMYKVCLNFTTTQKDINHATI--SNSGILVT---SSGTDNQTFVWDSRKPDKPLS 525

Query: 216 LLRHG 230
           LL+HG
Sbjct: 526 LLKHG 530


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 182 NEEGVVSFCSSWPCGHDS**ACSECASFHQLPCV 81
           NE      C  W C  D    C++C  ++ + CV
Sbjct: 257 NEPSNCKVCKKW-CAFDFSVQCADCKKYYHMDCV 289


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 137 HDS**ACSECASFHQLPCVTAQETLAEC 54
           H S  + S   ++HQL CV  Q+ L+EC
Sbjct: 52  HPSINSLSSFQTYHQLLCVLEQKHLSEC 79


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +3

Query: 429 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 608
           P H  A LQE   A  AA+    L+ ++NA    G +S D  +AL  P    S      +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373

Query: 609 RHSRTRRACH 638
            HS+++ + H
Sbjct: 374 SHSQSQNSLH 383


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/40 (20%), Positives = 22/40 (55%)
 Frame = -3

Query: 168 CVFL*QLAMWT*LLMSLLRMCIFPSTSLCHCSRNTGRMSD 49
           C FL    ++  + + +  +C+F  T++ +  +N  R+++
Sbjct: 37  CTFLLSTILYLGIAVIMSHLCVFDDTAMLYLRQNRSRLAE 76


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +2

Query: 542 FRPI*SSTVSKKLRFLSLED*RTAFTHS*SVSRDTLXDILFVREPPITTLGSCK 703
           F  +  S    K   ++ E+ + +F  + SV++D+  D   +++ P+T + SC+
Sbjct: 96  FNVVKESNDKPKENLVTSEECKASFFSTDSVNKDSTIDYDALQKDPLTYVKSCR 149


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 343 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 444
           +G+F+ +LF LIQ  +   +  W +   + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 618 VNAVLQSSKDKKRNFLETV 562
           +NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,869
Number of Sequences: 5004
Number of extensions: 58868
Number of successful extensions: 188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)