Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L05
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4) 46 2e-05
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21) 31 1.2
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07) 28 6.5
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 28 8.6
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)
Length = 81
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = -3
Query: 321 SESLIKQIPRLLGPGLNKAGKXP 253
S+SLIKQIPR+LGPGLNKAGK P
Sbjct: 28 SDSLIKQIPRILGPGLNKAGKFP 50
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 32.3 bits (70), Expect = 0.40
Identities = 11/44 (25%), Positives = 27/44 (61%)
Frame = -2
Query: 160 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKST 29
++ VGH E+ N+ +++ L ++ + W N++SL++K++
Sbjct: 322 AMKVGHTGQEKKEVISNIVEAVSGLAKIIPRGWNNIQSLNIKTS 365
>SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)
Length = 342
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +1
Query: 385 FQSLSIHTWHIQGFSLVTMLLVSKNA----NLHFRPRYVF*LYSAGETLVLLWVIVLQTN 552
+ S + TW + S +T+ +S LH R + +F + A L+++W+I L N
Sbjct: 100 YMSFELSTWLLLMSSFLTLTAISCERFAALTLHLRYQQMFTMKRAAMALIMIWLISLSLN 159
Query: 553 -LKLYSLQKVTFLV 591
++L L+ + + +
Sbjct: 160 VIRLLLLESLFWCI 173
>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 76 AVTQGS*WKDAHSEQAHQESCPH 144
AV+ WK H+ Q QESCPH
Sbjct: 103 AVSNPCFWKWIHAHQTAQESCPH 125
>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1161
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 409 WHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFL 588
W I LV L+ + N + R ++VF + E L+ +W + +T L +Q F+
Sbjct: 296 WFIWTAVLVDALIQANNGSWRRRAQFVFTILFDIEALIKIWCVGFRTYLNSSRMQFFEFI 355
Query: 589 V 591
+
Sbjct: 356 L 356
>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 163 LSVAVGHVDMTPDELAQNVHLSINFLVSLLKKH 65
+S AV + TPD ++ V +N L SL KKH
Sbjct: 654 VSSAVSEMSDTPDNVSNQVEKVVNELKSLKKKH 686
>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
Length = 1286
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 99 PSTSLCHCSRNTGRMSD 49
PS CHC N GRM D
Sbjct: 526 PSDPTCHCPSNNGRMKD 542
>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
Length = 1243
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = -3
Query: 558 LQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHC 436
LQ G K YDP K+K K KY+ PK+ + C ++ +QHC
Sbjct: 336 LQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHC 376
>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1867
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +1
Query: 409 WHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFL 588
W I LV L+ + N + + ++VF + E L+ +W + +T L +Q F+
Sbjct: 395 WFIWFAVLVDALIQANNGSWRRQAQFVFTILFDIEALIKIWCVGFRTYLNSSRMQFFEFI 454
Query: 589 VLRG 600
+ G
Sbjct: 455 LAVG 458
>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1402
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = -3
Query: 558 LQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHC 436
LQ G K YDP K+K K KY+ PK+ + C ++ +QHC
Sbjct: 336 LQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHC 376
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,890,090
Number of Sequences: 59808
Number of extensions: 450469
Number of successful extensions: 1043
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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