Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L05
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   150   1e-36
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   111   6e-25
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   107   8e-24
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical p...    30   1.4  
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   3.3  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  150 bits (363), Expect = 1e-36
 Identities = 74/132 (56%), Positives = 88/132 (66%)
 Frame = -3

Query: 648 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 469
           KVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP M
Sbjct: 3   KVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNM 62

Query: 468 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRL 289
           +VCV GDQ H DEA   ++P M                          ASESLIKQIPR+
Sbjct: 63  KVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRI 122

Query: 288 LGPGLNKAGKXP 253
           LGPGLNKAGK P
Sbjct: 123 LGPGLNKAGKFP 134



 Score =  107 bits (257), Expect = 8e-24
 Identities = 49/64 (76%), Positives = 57/64 (89%)
 Frame = -2

Query: 202 KGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMG 23
           + T+KFQMKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG
Sbjct: 151 RATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMG 210

Query: 22  PPQR 11
            PQR
Sbjct: 211 KPQR 214


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  111 bits (266), Expect = 6e-25
 Identities = 54/97 (55%), Positives = 62/97 (63%)
 Frame = -3

Query: 543 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 364
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA   ++P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 363 XXXXXXXXXXXXXASESLIKQIPRLLGPGLNKAGKXP 253
                        ASESLIKQIPR+LGPGLNKAGK P
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFP 104



 Score =  107 bits (257), Expect = 8e-24
 Identities = 49/64 (76%), Positives = 57/64 (89%)
 Frame = -2

Query: 202 KGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMG 23
           + T+KFQMKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG
Sbjct: 121 RATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMG 180

Query: 22  PPQR 11
            PQR
Sbjct: 181 KPQR 184


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  107 bits (257), Expect = 8e-24
 Identities = 49/64 (76%), Positives = 57/64 (89%)
 Frame = -2

Query: 202 KGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMG 23
           + T+KFQMKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG
Sbjct: 90  RATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMG 149

Query: 22  PPQR 11
            PQR
Sbjct: 150 KPQR 153



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 35/73 (47%), Positives = 39/73 (53%)
 Frame = -3

Query: 471 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 292
           M+VCV GDQ H DEA   ++P M                          ASESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 291 LLGPGLNKAGKXP 253
           +LGPGLNKAGK P
Sbjct: 61  ILGPGLNKAGKFP 73


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 160 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRCT 5
           SV + H+ ++P+ L Q   L+  F  +     W+ +R   MKS +G P   T
Sbjct: 349 SVTIDHLRISPESLVQIARLAQAFGTN---PDWKKLRLADMKSALGTPMHST 397


>Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical
           protein F53F4.11 protein.
          Length = 543

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -2

Query: 196 TIKFQMKKVLCLS-VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGP 20
           T+ + +++ +  S V VGH+  +  +L +N+   +  + S     + N+RS+++ ++ G 
Sbjct: 351 TVVYPLRRYMVRSCVNVGHLGQSSADLKENIDTVLEKIASKCPGGFANIRSIYLGASDGK 410

Query: 19  P 17
           P
Sbjct: 411 P 411


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 594 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 484
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,834,773
Number of Sequences: 27780
Number of extensions: 345988
Number of successful extensions: 865
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)