Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L05
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 143 9e-35
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 143 9e-35
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 142 3e-34
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 138 4e-33
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 48 8e-06
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 44 8e-05
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 35 0.061
At5g41880.1 68418.m05099 DNA primase small subunit family contai... 33 0.19
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.75
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 1.7
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 30 1.7
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 2.3
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 2.3
At2g42710.1 68415.m05289 ribosomal protein L1 family protein 29 3.0
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 4.0
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 28 5.3
At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein si... 28 7.0
At1g30080.1 68414.m03677 glycosyl hydrolase family 17 protein si... 27 9.3
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 143 bits (347), Expect = 9e-35
Identities = 70/132 (53%), Positives = 88/132 (66%)
Frame = -3
Query: 648 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 469
K+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM
Sbjct: 3 KLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 62
Query: 468 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRL 289
++C+LGD QH +EA+ + + M ASES+IKQIPRL
Sbjct: 63 KICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRL 122
Query: 288 LGPGLNKAGKXP 253
LGPGLNKAGK P
Sbjct: 123 LGPGLNKAGKFP 134
Score = 101 bits (241), Expect = 6e-22
Identities = 44/69 (63%), Positives = 58/69 (84%)
Frame = -2
Query: 217 RLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 38
++ + K T+KFQ+KKVLC+ VAVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++
Sbjct: 146 KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYL 205
Query: 37 KSTMGPPQR 11
KSTMGPPQR
Sbjct: 206 KSTMGPPQR 214
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 143 bits (347), Expect = 9e-35
Identities = 70/132 (53%), Positives = 88/132 (66%)
Frame = -3
Query: 648 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 469
K+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM
Sbjct: 3 KLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 62
Query: 468 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRL 289
++C+LGD QH +EA+ + + M ASES+IKQIPRL
Sbjct: 63 KICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRL 122
Query: 288 LGPGLNKAGKXP 253
LGPGLNKAGK P
Sbjct: 123 LGPGLNKAGKFP 134
Score = 101 bits (241), Expect = 6e-22
Identities = 44/69 (63%), Positives = 58/69 (84%)
Frame = -2
Query: 217 RLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 38
++ + K T+KFQ+KKVLC+ VAVG++ M +L QNV +S+NFLVSLLKK+WQNVR L++
Sbjct: 146 KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYL 205
Query: 37 KSTMGPPQR 11
KSTMGPPQR
Sbjct: 206 KSTMGPPQR 214
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 142 bits (343), Expect = 3e-34
Identities = 69/132 (52%), Positives = 87/132 (65%)
Frame = -3
Query: 648 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 469
K+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM
Sbjct: 3 KLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 62
Query: 468 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPRL 289
++C+LGD QH +EA+ + + M ASES+IKQIPRL
Sbjct: 63 KICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRL 122
Query: 288 LGPGLNKAGKXP 253
LGPGLNKAGK P
Sbjct: 123 LGPGLNKAGKFP 134
Score = 100 bits (239), Expect = 1e-21
Identities = 43/69 (62%), Positives = 58/69 (84%)
Frame = -2
Query: 217 RLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 38
++ + K T+KFQ+KKVLC+ VAVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++
Sbjct: 146 KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYL 205
Query: 37 KSTMGPPQR 11
KSTMGPPQR
Sbjct: 206 KSTMGPPQR 214
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 138 bits (333), Expect = 4e-33
Identities = 67/133 (50%), Positives = 88/133 (66%), Gaps = 1/133 (0%)
Frame = -3
Query: 648 KVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 472
K+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRPK
Sbjct: 3 KLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPK 62
Query: 471 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 292
M++C+LGD QH +EA+ + + M ASES+IKQIPR
Sbjct: 63 MKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIPR 122
Query: 291 LLGPGLNKAGKXP 253
LLGPGLNKAGK P
Sbjct: 123 LLGPGLNKAGKFP 135
Score = 98.3 bits (234), Expect = 4e-21
Identities = 42/69 (60%), Positives = 57/69 (82%)
Frame = -2
Query: 217 RLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHM 38
++ + K T+KFQ+KKVLC+ VAVG++ M ++ QNV +S+NFLVSLLKK+WQNVR L++
Sbjct: 147 KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYL 206
Query: 37 KSTMGPPQR 11
KSTMGPP R
Sbjct: 207 KSTMGPPNR 215
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/85 (27%), Positives = 43/85 (50%)
Frame = -2
Query: 289 VGSRFEQSW*IXLVFSPTRSP*RRRLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 110
+G +F QS + + ++ K G F M+ C ++ V + M D++ +N
Sbjct: 145 IGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFFMRTGSCSAIKVAKLSMESDDIVEN 204
Query: 109 VHLSINFLVSLLKKHWQNVRSLHMK 35
V ++N +V +L W+ +RSLH+K
Sbjct: 205 VTATLNGVVDVLPSRWKYIRSLHLK 229
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/85 (29%), Positives = 41/85 (48%)
Frame = -2
Query: 289 VGSRFEQSW*IXLVFSPTRSP*RRRLMKXKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 110
+G +F S I + + ++ K G+ F ++ C + VG + M E+ +N
Sbjct: 165 IGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFFIRTGTCSVIKVGKLSMDICEITEN 224
Query: 109 VHLSINFLVSLLKKHWQNVRSLHMK 35
V ++N LV L W VRSLH+K
Sbjct: 225 VMATLNGLVEFLPNKWTYVRSLHLK 249
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 34.7 bits (76), Expect = 0.061
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -2
Query: 166 CLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 35
C V V + M +E+A+NV ++N + L+ W+NV+ H+K
Sbjct: 197 CSVVKVAKLSMGRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLK 240
>At5g41880.1 68418.m05099 DNA primase small subunit family contains
Pfam profile: PF01896 DNA primase small subunit
Length = 407
Score = 33.1 bits (72), Expect = 0.19
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = -3
Query: 672 SLTNKMSXKVSRDTLYECVNAVLQSSKDKK---RNFLETVELQIGLKNYDPQKDKRFSGT 502
S + +S + + +E + LQS ++K R +E + D + K+ +
Sbjct: 275 SARSSLSEEATSLLRWEQLKKALQSKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHL 334
Query: 501 VKLKYIPRPKM-QVCVLGDQQHCDEAKTLNVPCM 403
+K + PK +VCV D +CDE L VP +
Sbjct: 335 LKAPFCVHPKTGRVCVPIDPNNCDEFDPLAVPTL 368
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 573 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 460
L V + G+K DP+ +KRF KL++ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -2
Query: 121 LAQNVHLSINFLVSLLKKH 65
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +3
Query: 495 ALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEERHSRTRRACHETLXTTFCLSE 671
A+ + HS + EALQS S V +++ SR R H TT L+E
Sbjct: 871 AVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDSRVRNMEHTMQHTTLSLNE 929
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -2
Query: 121 LAQNVHLSINFLVSLLKKH 65
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -2
Query: 121 LAQNVHLSINFLVSLLKKH 65
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
Length = 415
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -2
Query: 199 GTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLV-----SLLK--KHWQNVRSLH 41
G KF+M K L V +G + + + L +NV +N L+ L K K+ V + H
Sbjct: 327 GHTKFRMDKTSILHVPLGKMSFSEEALRENVGAFMNALLLAKPAGLKKTSKYAGYVNAFH 386
Query: 40 MKSTMG 23
+ STMG
Sbjct: 387 LCSTMG 392
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 473 FGRGMYFSFTVPEKRLSFC 529
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 648 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 514
KV + N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 234 KVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 397
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/79 (17%), Positives = 39/79 (49%)
Frame = -3
Query: 654 SXKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 475
S ++++ +Y+ +L + + + T+E Q+ DPQ+ ++ + Y+P
Sbjct: 57 SLRITKTRIYDTNPQILSAFANSNIEIIVTIENQVLPLLQDPQQATQWVDSHIKPYVPAT 116
Query: 474 KMQVCVLGDQQHCDEAKTL 418
++ ++G++ D+ +L
Sbjct: 117 RITGIMVGNELFTDDDSSL 135
>At1g30080.1 68414.m03677 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 408
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = -3
Query: 654 SXKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 475
S +++ +Y+ VL S + TVE ++ DPQ+ ++ T Y P
Sbjct: 59 SLHINKTRIYDTNPRVLTSFANSNIELFVTVENEMLPSLVDPQQALQWVTTRIKPYFPAT 118
Query: 474 KMQVCVLGDQQHCDEAKTL 418
K+ +G++ + D+ +L
Sbjct: 119 KIGGIAVGNELYTDDDSSL 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,866,594
Number of Sequences: 28952
Number of extensions: 318510
Number of successful extensions: 781
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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