Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L04
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch...   151   8e-38
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    29   0.54 
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   2.2  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   2.9  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   6.7  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   6.7  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    25   6.7  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   8.8  

>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score =  151 bits (365), Expect = 8e-38
 Identities = 72/90 (80%), Positives = 81/90 (90%)
 Frame = -3

Query: 273 GILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 94
           GI+P LQNIV+TVNLDC+LDLK IALHARNAEYNPKRFAAVIMRIREP++TALIF+SGKM
Sbjct: 53  GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKSTALIFASGKM 112

Query: 93  VCTGAKSEEDSRLAARKYARIIQKXGCTEK 4
           V  G KSE+DS+LA+RKYARIIQK G   K
Sbjct: 113 VVLGGKSEDDSKLASRKYARIIQKLGFNAK 142



 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
 Frame = -3

Query: 261 QLQNIVSTVNLDCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 85
           ++QNIV + ++   + L+ +A  H   + Y P+ F  +I R+ +P+   LIF SGK+V T
Sbjct: 147 KIQNIVGSCDVKFPIRLEGLAYSHGTFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 206

Query: 84  GAKSEED 64
           GAK  E+
Sbjct: 207 GAKVREE 213


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 0.54
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = +3

Query: 336 VDLIDFLQL----SSETSYFVEFEAASSVAELHSWLLVH 440
           +DL D+++L    S + S  + F+ A +VA LHS+ ++H
Sbjct: 596 IDLFDYIELKPSISEKESKAIFFQIALAVAHLHSFDIIH 634


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 409 TDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTTLCRPWNFTT 260
           TDD      +    DDS ++    +N   S S   D  D++LC+P NF T
Sbjct: 196 TDDGEEVCIRLAKVDDSFQRKHTVSNFSVSKS---DDHDSSLCQPPNFVT 242


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 436 TNSQLCN-SATDDAASNSTKYDVSDDSCRKSI 344
           T SQL + SA +D+ SNST+YD    S  +S+
Sbjct: 334 TRSQLNDLSAENDSTSNSTEYDDQLQSILRSL 365


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 42  IFLPLNGSLPHFWHQYRPFYQMRKLKLLFSVPLF 143
           +F P N S PHF  +   F   R ++ LF++P F
Sbjct: 431 LFSP-NASQPHFQPRAPTFGIPRNVRSLFTLPFF 463


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 303 SLGQD*LGLAFVDLIDFLQLSSETSYFVEFEAASSVAEL 419
           SL ++  G  F D  DF+ ++  T  FV++   +S A+L
Sbjct: 130 SLVKEYKGTTFFDGFDFMNITDPTHGFVQYLDRNSSAKL 168


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 333 MLSQASPAPMTPLTPLSADPGILPQLQ 253
           ++S ASP  M  LTP  + P  LPQL+
Sbjct: 80  VVSIASPRQMQVLTPPLSCPESLPQLE 106


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 345 SSQQMLSQASPAPMTPLTPLSADPGILPQLQNI 247
           SS   L++  P+P +PLTPL  +    P+++ +
Sbjct: 101 SSTHSLTR-QPSPRSPLTPLKGNTRASPEIRYV 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,727
Number of Sequences: 5004
Number of extensions: 39698
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)