Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L04
(512 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0114 - 14911119-14911301,14911458-14911550,14911634-149116... 157 4e-39
12_02_0891 + 24065001-24065101,24065260-24065345,24065902-240659... 149 2e-36
03_05_0548 + 25439649-25439734,25440712-25440799,25441160-254412... 142 1e-34
01_06_0542 + 30096277-30096340,30096444-30096529,30096810-300969... 29 2.2
10_02_0181 + 6348677-6348946,6348963-6349176,6351048-6351413,635... 28 3.8
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793... 28 5.1
05_05_0327 + 24126075-24126453,24128037-24128431,24129009-24129656 28 5.1
01_05_0776 + 25072541-25073080,25073174-25073418,25073558-250739... 28 5.1
09_04_0520 + 18286435-18287279,18287818-18288697 27 8.8
04_04_0442 - 25229186-25229568,25229740-25232671 27 8.8
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764... 27 8.8
>10_08_0114 -
14911119-14911301,14911458-14911550,14911634-14911678,
14911831-14911953,14912090-14912177,14912976-14913118
Length = 224
Score = 157 bits (382), Expect = 4e-39
Identities = 76/99 (76%), Positives = 86/99 (86%)
Frame = -3
Query: 300 PLTPLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 121
P+ + GI+P LQNIVSTVNLDC+LDLKKIAL ARNAEYNPKRFAAVIMRIR+P+TT
Sbjct: 33 PVDLVEHPSGIVPTLQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTT 92
Query: 120 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKXGCTEK 4
ALIF+SGKMVCTGAKSE+ S+LAARKYARI+QK G K
Sbjct: 93 ALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAK 131
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = -3
Query: 261 QLQNIVSTVNLDCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 85
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 136 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 195
Query: 84 GAKSEED 64
GAK ++
Sbjct: 196 GAKYRKE 202
>12_02_0891 +
24065001-24065101,24065260-24065345,24065902-24065965,
24066137-24066224,24066810-24066881,24067821-24067871,
24067940-24067984,24068086-24068178,24068265-24068366,
24068442-24068515,24068540-24068579
Length = 271
Score = 149 bits (360), Expect = 2e-36
Identities = 73/91 (80%), Positives = 79/91 (86%)
Frame = -3
Query: 276 PGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 97
P + +NIVSTVNLDCKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 77 PASMCSHKNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGK 136
Query: 96 MVCTGAKSEEDSRLAARKYARIIQKXGCTEK 4
MVCTGAKSE+ S+LAARKYARIIQK G K
Sbjct: 137 MVCTGAKSEQQSKLAARKYARIIQKLGFAAK 167
Score = 50.8 bits (116), Expect = 6e-07
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = -3
Query: 261 QLQNIVSTVNLDCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 85
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 172 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 231
Query: 84 GAKSEEDSRLA 52
GAK +++ A
Sbjct: 232 GAKVRDETYTA 242
>03_05_0548 +
25439649-25439734,25440712-25440799,25441160-25441204,
25441407-25441478,25442402-25442452,25442527-25442571,
25442670-25442762,25442848-25442949,25443024-25443097,
25443130-25443160
Length = 228
Score = 142 bits (345), Expect = 1e-34
Identities = 77/105 (73%), Positives = 82/105 (78%), Gaps = 15/105 (14%)
Frame = -3
Query: 273 GILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPK---------------RFAAVIMRI 139
GI+P LQNIVSTVNLDCKLDLK IAL ARNAEYNPK RFAAVIMRI
Sbjct: 23 GIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKTQHEVLGDFVTICNIRFAAVIMRI 82
Query: 138 REPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKXGCTEK 4
REP+TTALIF+SGKMVCTGAKSE+ S+LAARKYARIIQK G K
Sbjct: 83 REPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAK 127
Score = 50.8 bits (116), Expect = 6e-07
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = -3
Query: 261 QLQNIVSTVNLDCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 85
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 132 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 191
Query: 84 GAKSEEDSRLA 52
GAK +++ A
Sbjct: 192 GAKVRDETYTA 202
>01_06_0542 +
30096277-30096340,30096444-30096529,30096810-30096934,
30097405-30097513,30097865-30097981,30098066-30098149,
30098795-30098914,30099416-30099502,30100160-30100237
Length = 289
Score = 29.1 bits (62), Expect = 2.2
Identities = 23/87 (26%), Positives = 35/87 (40%)
Frame = +2
Query: 50 AAKRESSSLLAPVQTILPDEKIKAVVLGSLILIITAAKRLGLYSALRACNAIFFKSNLQS 229
AA+ ++S + P + PD + V + A+ R+G L A + + + L
Sbjct: 27 AAREAATSFVHPAAVVHPDAVVGQGVSIGPFCTVGASARIGDACQLHAGSHVMGDTELGE 86
Query: 230 RFTVETMFCNCGKIPGSAESGVRGVIG 310
R V T IPG G VIG
Sbjct: 87 RCVVLTGAILGSDIPGQTIIGENNVIG 113
>10_02_0181 +
6348677-6348946,6348963-6349176,6351048-6351413,
6351607-6351728,6351767-6352093
Length = 432
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 180 EYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 76
EY P+RF + I+ L F +G+ VC GA+
Sbjct: 330 EYRPERFLEESIDIKGSDYRVLPFGAGRRVCPGAQ 364
>06_02_0251 -
13478902-13478952,13478989-13479055,13479168-13479379,
13480144-13481540,13481574-13482432,13482537-13482836
Length = 961
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -2
Query: 433 NSQLCNSATDDAASNSTKYDVSDDSCRKSIKSTNAKPS 320
+S++ + T+D AS S+ YD+ ++S +S K++ S
Sbjct: 665 SSEIDSIGTNDNASTSSVYDLPEESIHQSAKNSTENTS 702
>05_05_0327 + 24126075-24126453,24128037-24128431,24129009-24129656
Length = 473
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 180 EYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 76
EY P+RF + I+ L F +G+ VC GA+
Sbjct: 372 EYRPERFIEENIDIKGSDFRVLPFGAGRRVCPGAQ 406
>01_05_0776 +
25072541-25073080,25073174-25073418,25073558-25073942,
25074058-25074483
Length = 531
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 180 EYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 82
E+ P+RFA I R R L F G VC G
Sbjct: 449 EFRPERFAEGISRASNDRGAFLPFGWGPRVCIG 481
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 388 STKYDVSDDSCRKSIKSTNAKP 323
ST D+SD+S R S+ S KP
Sbjct: 132 STSSDISDESSRSSMSSATTKP 153
>04_04_0442 - 25229186-25229568,25229740-25232671
Length = 1104
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -3
Query: 285 SADPGILPQLQNIVSTVNLDCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIF 109
S PGIL + N+ ++D +++ KIAL + + Y+ V++ + E R A +
Sbjct: 1029 SLGPGILDKNLNLEDKTSVDHMIEVLKIALLCTSMSPYDRPPMRNVVVMLSESRDRARMS 1088
Query: 108 SS 103
SS
Sbjct: 1089 SS 1090
>01_06_1536 +
38075023-38075359,38075834-38075963,38076204-38076419,
38076520-38077137,38077226-38078075
Length = 716
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -3
Query: 312 APMTPLTPLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNP 169
A + P T L++ P ++ + + LDCK +K H A NP
Sbjct: 465 ALLNPETMLASQPEVIGASSHSAAAKILDCKQFIKHYDQHTPRAPLNP 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,357,351
Number of Sequences: 37544
Number of extensions: 247211
Number of successful extensions: 893
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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