Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L04
         (512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                  150   6e-37
SB_46399| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)                 29   1.7  
SB_40295| Best HMM Match : HALZ (HMM E-Value=0.25)                     29   2.2  
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_30676| Best HMM Match : DUF999 (HMM E-Value=6.7)                    28   5.2  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             27   6.9  
SB_10768| Best HMM Match : Collagen (HMM E-Value=1.5)                  27   6.9  
SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)               27   6.9  
SB_50538| Best HMM Match : Moricin (HMM E-Value=4.5)                   27   6.9  

>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score =  150 bits (364), Expect = 6e-37
 Identities = 73/84 (86%), Positives = 77/84 (91%)
 Frame = -3

Query: 255 QNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 76
           +NIVSTVNL CKLDLKKIAL ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK
Sbjct: 284 RNIVSTVNLGCKLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 343

Query: 75  SEEDSRLAARKYARIIQKXGCTEK 4
           SEE S+LAARKYAR++QK G   K
Sbjct: 344 SEEQSKLAARKYARVVQKLGFPAK 367


>SB_46399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 363 IAAGNLSSQQMLSQASPAPMTPLTP 289
           +  GN SS +  S A  +PMTPLTP
Sbjct: 308 VTNGNASSNETTSSAPASPMTPLTP 332


>SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)
          Length = 473

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/68 (26%), Positives = 27/68 (39%)
 Frame = +2

Query: 131 GSLILIITAAKRLGLYSALRACNAIFFKSNLQSRFTVETMFCNCGKIPGSAESGVRGVIG 310
           GS  L++      GL  A R  NA    + +  + TVE   C  G +     +G+    G
Sbjct: 116 GSPYLLVALRMLEGLVLAARMLNAAILSAIMFEKVTVENSRCTVGSVATMPITGMLTKYG 175

Query: 311 AGLAWLSI 334
               W S+
Sbjct: 176 FDGGWASV 183


>SB_40295| Best HMM Match : HALZ (HMM E-Value=0.25)
          Length = 477

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 297 LTPLSADPG--ILPQLQNIVSTVNLDCKLDLK 208
           LTPL    G  ILP+LQN  +T+ +D K  LK
Sbjct: 58  LTPLDVGRGVNILPRLQNQTATIKVDLKRMLK 89


>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 360 AAGNLSSQQML-----SQASPAPMTPLTPLSADPGILPQLQNIVSTVNLDCKL 217
           A G  + +QM+      +A P P TP   L     +LP +QN V      CK+
Sbjct: 206 AIGQTNKEQMILIGRGKRAPPHPFTPRHQLITPQVLLPPIQNAVLVFIFSCKV 258


>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 512 PLWVRRQL*DLAQSWGLHR 456
           PLWV  +  DLA+ WGL R
Sbjct: 689 PLWVNERNVDLAEDWGLGR 707


>SB_30676| Best HMM Match : DUF999 (HMM E-Value=6.7)
          Length = 310

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/72 (22%), Positives = 38/72 (52%)
 Frame = +3

Query: 90  RPFYQMRKLKLLFSVPLFS*LQRQNVWDYTQHYEHVMQSSSNLICSQDLQ*RLCFVTVVK 269
           RP+ +MR  +  F + L   L   ++ +  + ++H M   +N     DLQ  +C++  + 
Sbjct: 226 RPYSEMR-CRTTFYIALGR-LLMVDLGEDDEKFDHFMSPITNFREKVDLQAVICWLPALV 283

Query: 270 FQGLQRVVSEES 305
           F+ ++R++  ++
Sbjct: 284 FRSVKRIIGPDT 295


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/63 (22%), Positives = 25/63 (39%)
 Frame = -2

Query: 454  VYAHICTNSQLCNSATDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTTLCRP 275
            +Y   C N   C        S++ +  ++   C +S+          CP +SS   LC P
Sbjct: 3425 IYGEACPNGTFC-----PPGSSAPRECLAGYFCNRSMSQAPCPAGYYCPRNSSQPVLCPP 3479

Query: 274  WNF 266
             ++
Sbjct: 3480 GHY 3482


>SB_10768| Best HMM Match : Collagen (HMM E-Value=1.5)
          Length = 274

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 363 IAAGNLSSQQMLSQASPAPMTPL--TPLSADP 274
           IAA + SS   L  A+P P TP    P SADP
Sbjct: 25  IAAASPSSSADLEVAAPTPATPAPNIPASADP 56


>SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = +2

Query: 8    SVQPXFWIILAYFLAAKRESSSLLAPVQTILPDEKIKAVVLGSLILIITAAKRLGLYSAL 187
            +++P  W I   F  A R+      P   I PD   K VV  +L+   T  +R   Y AL
Sbjct: 1114 TIKPASWAISLLFPLALRQHFRYPPPTGNIAPDVG-KPVVPAALMNRPTRGERRFAYWAL 1172

Query: 188  RACNAIFF 211
              C   ++
Sbjct: 1173 AECILAYY 1180


>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
          Length = 321

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 321 ASPAPMTPLTPLSADPGILPQLQN 250
           A+P P  P TP +  PG  P+++N
Sbjct: 217 ATPTPKPPPTPKTPKPGAAPKIKN 240


>SB_50538| Best HMM Match : Moricin (HMM E-Value=4.5)
          Length = 173

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 418 NSATDDAASNSTKYDVSDDSCRKSIKS 338
           + A  D+  NSTKYD   D CR +  S
Sbjct: 95  DKAVFDSKENSTKYDDKADQCRDTTAS 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,613,188
Number of Sequences: 59808
Number of extensions: 298171
Number of successful extensions: 1129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)