Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L04
(512 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-8|AAA19055.1| 340|Caenorhabditis elegans Tata-binding pr... 161 2e-40
L07754-1|AAA03582.1| 340|Caenorhabditis elegans TATA-box bindin... 161 2e-40
AF303249-1|AAG50207.1| 340|Caenorhabditis elegans transcription... 161 2e-40
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 57 6e-09
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 57 6e-09
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 57 6e-09
AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical ... 29 1.5
Z82078-2|CAD54160.1| 714|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z82078-1|CAB04944.2| 707|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 28 4.5
U67952-1|AAB07577.2| 414|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical p... 27 6.0
Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF034078-1|AAC02976.1| 815|Caenorhabditis elegans putative E1-E... 27 6.0
U97010-3|AAB52321.1| 59|Caenorhabditis elegans Hypothetical pr... 27 7.9
>U10401-8|AAA19055.1| 340|Caenorhabditis elegans Tata-binding
protein protein 1 protein.
Length = 340
Score = 161 bits (392), Expect = 2e-40
Identities = 83/103 (80%), Positives = 86/103 (83%)
Frame = -3
Query: 312 APMTPLTPLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 133
A M P TP S +P LQNIVSTVNL +LDLKKIALHARNAEYNPKRFAAVIMRIRE
Sbjct: 150 ATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIRE 209
Query: 132 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKXGCTEK 4
PRTTALIFSSGKMVCTGAKSEE SRLAARKYARI+QK G K
Sbjct: 210 PRTTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQAK 252
Score = 50.4 bits (115), Expect = 7e-07
Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = -3
Query: 258 LQNIVSTVNLDCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 82
+QN+V + ++ + L+ + + H++ + Y P+ F +I R+ +PR LIF SGK+V TG
Sbjct: 258 VQNMVGSCDVRFPIQLEGLCITHSQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVITG 317
Query: 81 AKSEED 64
AK++ D
Sbjct: 318 AKTKRD 323
>L07754-1|AAA03582.1| 340|Caenorhabditis elegans TATA-box binding
protein protein.
Length = 340
Score = 161 bits (392), Expect = 2e-40
Identities = 83/103 (80%), Positives = 86/103 (83%)
Frame = -3
Query: 312 APMTPLTPLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 133
A M P TP S +P LQNIVSTVNL +LDLKKIALHARNAEYNPKRFAAVIMRIRE
Sbjct: 150 ATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIRE 209
Query: 132 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKXGCTEK 4
PRTTALIFSSGKMVCTGAKSEE SRLAARKYARI+QK G K
Sbjct: 210 PRTTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQAK 252
Score = 50.4 bits (115), Expect = 7e-07
Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = -3
Query: 258 LQNIVSTVNLDCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 82
+QN+V + ++ + L+ + + H++ + Y P+ F +I R+ +PR LIF SGK+V TG
Sbjct: 258 VQNMVGSCDVRFPIQLEGLCITHSQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVITG 317
Query: 81 AKSEED 64
AK++ D
Sbjct: 318 AKTKRD 323
>AF303249-1|AAG50207.1| 340|Caenorhabditis elegans transcription
factor TFIID protein.
Length = 340
Score = 161 bits (392), Expect = 2e-40
Identities = 83/103 (80%), Positives = 86/103 (83%)
Frame = -3
Query: 312 APMTPLTPLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 133
A M P TP S +P LQNIVSTVNL +LDLKKIALHARNAEYNPKRFAAVIMRIRE
Sbjct: 150 ATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIRE 209
Query: 132 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKXGCTEK 4
PRTTALIFSSGKMVCTGAKSEE SRLAARKYARI+QK G K
Sbjct: 210 PRTTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQAK 252
Score = 50.4 bits (115), Expect = 7e-07
Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = -3
Query: 258 LQNIVSTVNLDCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 82
+QN+V + ++ + L+ + + H++ + Y P+ F +I R+ +PR LIF SGK+V TG
Sbjct: 258 VQNMVGSCDVRFPIQLEGLCITHSQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVITG 317
Query: 81 AKSEED 64
AK++ D
Sbjct: 318 AKTKRD 323
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 57.2 bits (132), Expect = 6e-09
Identities = 29/90 (32%), Positives = 50/90 (55%)
Frame = -3
Query: 291 PLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALI 112
P+ D I Q++N+V L +DL+K+A++ N Y ++ ++ + R P +
Sbjct: 256 PMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREK-GVMMKQKRSPGCYIKV 314
Query: 111 FSSGKMVCTGAKSEEDSRLAARKYARIIQK 22
+SSGK+ G +SE D + AAR AR +Q+
Sbjct: 315 YSSGKVYIVGCRSEADCKRAARSIARHVQR 344
Score = 40.3 bits (90), Expect = 8e-04
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = -3
Query: 261 QLQNIVSTVNLDCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 85
++ N+++T L + ++++A + + Y P+ ++ R P+ T I ++G + T
Sbjct: 359 RVNNVLATCRLPFGIKIEEVAAKYPSESTYEPELSVGLVWRSVTPKATLRIHTTGSITVT 418
Query: 84 GAKSEEDSRLAARKYARIIQKXGCTEK 4
GA+SE D K I+ + C E+
Sbjct: 419 GAQSEADVLEVLSKIYPIVLEFRCLER 445
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 57.2 bits (132), Expect = 6e-09
Identities = 29/90 (32%), Positives = 50/90 (55%)
Frame = -3
Query: 291 PLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALI 112
P+ D I Q++N+V L +DL+K+A++ N Y ++ ++ + R P +
Sbjct: 256 PMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREK-GVMMKQKRSPGCYIKV 314
Query: 111 FSSGKMVCTGAKSEEDSRLAARKYARIIQK 22
+SSGK+ G +SE D + AAR AR +Q+
Sbjct: 315 YSSGKVYIVGCRSEADCKRAARSIARHVQR 344
Score = 40.3 bits (90), Expect = 8e-04
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = -3
Query: 261 QLQNIVSTVNLDCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 85
++ N+++T L + ++++A + + Y P+ ++ R P+ T I ++G + T
Sbjct: 359 RVNNVLATCRLPFGIKIEEVAAKYPSESTYEPELSVGLVWRSVTPKATLRIHTTGSITVT 418
Query: 84 GAKSEEDSRLAARKYARIIQKXGCTEK 4
GA+SE D K I+ + C E+
Sbjct: 419 GAQSEADVLEVLSKIYPIVLEFRCLER 445
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 57.2 bits (132), Expect = 6e-09
Identities = 29/90 (32%), Positives = 50/90 (55%)
Frame = -3
Query: 291 PLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALI 112
P+ D I Q++N+V L +DL+K+A++ N Y ++ ++ + R P +
Sbjct: 256 PMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREK-GVMMKQKRSPGCYIKV 314
Query: 111 FSSGKMVCTGAKSEEDSRLAARKYARIIQK 22
+SSGK+ G +SE D + AAR AR +Q+
Sbjct: 315 YSSGKVYIVGCRSEADCKRAARSIARHVQR 344
Score = 40.3 bits (90), Expect = 8e-04
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = -3
Query: 261 QLQNIVSTVNLDCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 85
++ N+++T L + ++++A + + Y P+ ++ R P+ T I ++G + T
Sbjct: 359 RVNNVLATCRLPFGIKIEEVAAKYPSESTYEPELSVGLVWRSVTPKATLRIHTTGSITVT 418
Query: 84 GAKSEEDSRLAARKYARIIQKXGCTEK 4
GA+SE D K I+ + C E+
Sbjct: 419 GAQSEADVLEVLSKIYPIVLEFRCLER 445
>AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical
protein W09G12.7 protein.
Length = 368
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 412 ATDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTT 287
++DD++ NS + SDD + K +K S +DSSD++
Sbjct: 78 SSDDSSDNSDSSESSDDDKKSKKKKKKSKKDSSDSSDSSDSS 119
>Z82078-2|CAD54160.1| 714|Caenorhabditis elegans Hypothetical
protein W09D6.1b protein.
Length = 714
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = -3
Query: 141 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKXGCT 10
+R+ RTT L+F+ GK V A+++E+ LAA +IQ G T
Sbjct: 86 VRKFRTT-LVFN-GKHVSRIAQNDENGLLAAESICYVIQTSGTT 127
>Z82078-1|CAB04944.2| 707|Caenorhabditis elegans Hypothetical
protein W09D6.1a protein.
Length = 707
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = -3
Query: 141 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKXGCT 10
+R+ RTT L+F+ GK V A+++E+ LAA +IQ G T
Sbjct: 86 VRKFRTT-LVFN-GKHVSRIAQNDENGLLAAESICYVIQTSGTT 127
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Frame = -2
Query: 496 ANCRIWRNHGDSTEVYAHICTNSQLCNSA---TDDAASNSTKYDVSDDSCRKSIKSTNAK 326
+NC W +G T + +Q C S D++ +S+ + S S +T++
Sbjct: 7 SNCANWVANGFCTSTFYTTAQKTQYCASTCSLCSDSSDSSSSSSTASTSSSSSTAATSSD 66
Query: 325 PS*SCPNDSSDTTLCRPWNFTTVTKHS 245
S S + SS + + TT S
Sbjct: 67 DSSSSSSSSSSSASSTSSSDTTTADSS 93
>U67952-1|AAB07577.2| 414|Caenorhabditis elegans Hypothetical
protein F39B3.2 protein.
Length = 414
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -2
Query: 361 SCRKSIKSTNAKP---S*SCPNDSSDTTLCRPWNFTTVTKHSLYCKS*LQIRFEED 203
SCRK IKST + N+ S+ +LC P +FTT +Y + R++ +
Sbjct: 343 SCRKCIKSTLIGACIYDMAQWNNDSEVSLCAPSSFTTGNATKVYGSTERSFRYKRN 398
>Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical
protein Y49E10.11b protein.
Length = 1089
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 496 ANCRIWRNHGDSTEVYAHICTNSQLCNSATDDAASNSTKYD 374
A+ R+W GD E +I + LC++ T+ + T Y+
Sbjct: 641 ADIRVWMLTGDKRETAINIAHSCALCHTNTELLIVDKTTYE 681
>Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical
protein Y49E10.11a protein.
Length = 1139
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 496 ANCRIWRNHGDSTEVYAHICTNSQLCNSATDDAASNSTKYD 374
A+ R+W GD E +I + LC++ T+ + T Y+
Sbjct: 641 ADIRVWMLTGDKRETAINIAHSCALCHTNTELLIVDKTTYE 681
>AF034078-1|AAC02976.1| 815|Caenorhabditis elegans putative E1-E2
ATPase protein.
Length = 815
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 496 ANCRIWRNHGDSTEVYAHICTNSQLCNSATDDAASNSTKYD 374
A+ R+W GD E +I + LC++ T+ + T Y+
Sbjct: 317 ADIRVWMLTGDKRETAINIAHSCALCHTNTELLIVDKTTYE 357
>U97010-3|AAB52321.1| 59|Caenorhabditis elegans Hypothetical
protein W08A12.2 protein.
Length = 59
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 6 FLCSLISGLF*HIFLPLNGSLPHFWHQYRPF 98
F+ +++ +F FL + SLP +WH + PF
Sbjct: 7 FVFTILLSIF---FLTVESSLPDWWHLHSPF 34
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,605,096
Number of Sequences: 27780
Number of extensions: 226196
Number of successful extensions: 758
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -