Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_L04
(512 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13445.1 68416.m01691 transcription initiation factor IID-1 (... 156 7e-39
At1g55520.2 68414.m06352 transcription initiation factor IID-2 (... 155 2e-38
At1g55520.1 68414.m06351 transcription initiation factor IID-2 (... 155 2e-38
At2g07300.1 68415.m00837 hypothetical protein 30 1.1
At2g40720.1 68415.m05023 pentatricopeptide (PPR) repeat-containi... 29 1.4
At1g13080.2 68414.m01517 cytochrome P450 family protein identica... 29 1.4
At1g13080.1 68414.m01516 cytochrome P450 family protein identica... 29 1.4
At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal... 29 2.4
At5g25900.1 68418.m03075 ent-kaurene oxidase, putative (GA3) / c... 29 2.4
At1g51350.1 68414.m05775 armadillo/beta-catenin repeat family pr... 28 3.2
At1g17060.1 68414.m02075 cytochrome P450, putative 41% identical... 28 3.2
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:... 28 4.2
At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transfera... 27 5.6
At1g18790.1 68414.m02342 RWP-RK domain-containing protein contai... 27 7.4
At5g08520.1 68418.m01011 myb family transcription factor contain... 27 9.8
At3g26220.1 68416.m03271 cytochrome P450 family protein identica... 27 9.8
At2g36800.1 68415.m04513 UDP-glucoronosyl/UDP-glucosyl transfera... 27 9.8
>At3g13445.1 68416.m01691 transcription initiation factor IID-1
(TFIID-1) / TATA-box factor 1 / TATA sequence-binding
protein 1 (TBP1) identical to Swiss-Prot:P28147
transcription initiation factor TFIID-1 (TATA-box factor
1)(TATA sequence-binding protein 1) (TBP-1) [Arabidopsis
thaliana]
Length = 200
Score = 156 bits (379), Expect = 7e-39
Identities = 78/96 (81%), Positives = 85/96 (88%), Gaps = 1/96 (1%)
Frame = -3
Query: 288 LSADP-GILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALI 112
LS P GI+P LQNIVSTVNLDCKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALI
Sbjct: 14 LSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALI 73
Query: 111 FSSGKMVCTGAKSEEDSRLAARKYARIIQKXGCTEK 4
F+SGKMVCTGAKSE+ S++AARKYARI+QK G K
Sbjct: 74 FASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAK 109
Score = 50.8 bits (116), Expect = 5e-07
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = -3
Query: 261 QLQNIVSTVNLDCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 85
++QNIV + ++ + L+ +A HA + Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 173
Query: 84 GAKSEEDS 61
GAK +++
Sbjct: 174 GAKMRDET 181
>At1g55520.2 68414.m06352 transcription initiation factor IID-2
(TFIID-2) / TATA-box factor 2 / TATA sequence-binding
protein 2 (TBP2) identical to
Swiss-Prot:P28148|TF22_ARATH Transcription initiation
factor TFIID-2 (TATA-box factor 2) (TATA
sequence-binding protein 2) (TBP-2) [Arabidopsis
thaliana]
Length = 200
Score = 155 bits (376), Expect = 2e-38
Identities = 76/90 (84%), Positives = 81/90 (90%)
Frame = -3
Query: 273 GILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 94
GI+P LQNIVSTVNLDCKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 93 VCTGAKSEEDSRLAARKYARIIQKXGCTEK 4
VCTGAKSE S+LAARKYARI+QK G K
Sbjct: 80 VCTGAKSEHLSKLAARKYARIVQKLGFPAK 109
Score = 50.8 bits (116), Expect = 5e-07
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = -3
Query: 261 QLQNIVSTVNLDCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 85
++QNIV + ++ + L+ +A H+ + Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVIT 173
Query: 84 GAKSEEDSRLA 52
GAK E++ A
Sbjct: 174 GAKMREETYTA 184
>At1g55520.1 68414.m06351 transcription initiation factor IID-2
(TFIID-2) / TATA-box factor 2 / TATA sequence-binding
protein 2 (TBP2) identical to
Swiss-Prot:P28148|TF22_ARATH Transcription initiation
factor TFIID-2 (TATA-box factor 2) (TATA
sequence-binding protein 2) (TBP-2) [Arabidopsis
thaliana]
Length = 200
Score = 155 bits (376), Expect = 2e-38
Identities = 76/90 (84%), Positives = 81/90 (90%)
Frame = -3
Query: 273 GILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 94
GI+P LQNIVSTVNLDCKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 20 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 79
Query: 93 VCTGAKSEEDSRLAARKYARIIQKXGCTEK 4
VCTGAKSE S+LAARKYARI+QK G K
Sbjct: 80 VCTGAKSEHLSKLAARKYARIVQKLGFPAK 109
Score = 50.8 bits (116), Expect = 5e-07
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = -3
Query: 261 QLQNIVSTVNLDCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 85
++QNIV + ++ + L+ +A H+ + Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVIT 173
Query: 84 GAKSEEDSRLA 52
GAK E++ A
Sbjct: 174 GAKMREETYTA 184
>At2g07300.1 68415.m00837 hypothetical protein
Length = 219
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 23 FWIILAYFLAAKRESSSLLAPVQTILPDEKIKAV 124
FW I+ YF R + AP+ T+ PD I+ V
Sbjct: 177 FWKIVTYFDGGHRMKIASHAPISTVYPDPDIEPV 210
>At2g40720.1 68415.m05023 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 860
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = +2
Query: 116 KAVVLGSLIL--IITAAKRLGLYSALRACNAIFFKSNLQSRFTVE----TMFCNCGKIP 274
K+V+ S L +I+ LGLY+ ++ +A FK +QS T+E T++ CG P
Sbjct: 367 KSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDP 425
>At1g13080.2 68414.m01517 cytochrome P450 family protein identical
to gb|D78605 cytochrome P450 monooxygenase from
Arabidopsis thaliana and is a member of the PF|00067
Cytochrome P450 family. ESTs gb|Z18072, gb|Z35218 and
gb|T43466 come from this gene
Length = 384
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 180 EYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 82
E+NP+RFA + R L F SG+ +C G
Sbjct: 296 EFNPERFANSSVDFRGQHFDLLPFGSGRRICPG 328
>At1g13080.1 68414.m01516 cytochrome P450 family protein identical
to gb|D78605 cytochrome P450 monooxygenase from
Arabidopsis thaliana and is a member of the PF|00067
Cytochrome P450 family. ESTs gb|Z18072, gb|Z35218 and
gb|T43466 come from this gene
Length = 502
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 180 EYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 82
E+NP+RFA + R L F SG+ +C G
Sbjct: 414 EFNPERFANSSVDFRGQHFDLLPFGSGRRICPG 446
>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catalytic
subunit, putative similar to SP|O48653 DNA polymerase
alpha catalytic subunit (EC 2.7.7.7) {Oryza sativa};
contains Pfam profiles: PF03175 DNA polymerase type B,
organellar and viral, PF00136 DNA polymerase family B,
PF03104 DNA polymerase family B, exonuclease domain
Length = 1492
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 300 PLTPLSADPGILPQLQNIVSTVNLDCKLDLKK 205
P P S PGILP+L + ++ KL +KK
Sbjct: 945 PRLPSSQTPGILPKLMEHLVSIRKSVKLKMKK 976
>At5g25900.1 68418.m03075 ent-kaurene oxidase, putative (GA3) /
cytochrome P450 identical to GA3 [Arabidopsis thaliana]
GI:3342249; similar to ent-kaurene oxidase [Cucurbita
maxima] GI:11934675; contains Pfam profile PF00067:
Cytochrome P450
Length = 509
Score = 28.7 bits (61), Expect = 2.4
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Frame = -3
Query: 336 QMLSQASPAPMTPLTPLSADPGI----LPQLQNIVSTVNLDCKLDLKKIALHARNAEYNP 169
+ L + SPAP+ P+ D I +P I + C +D K+ R ++ P
Sbjct: 372 ETLRKYSPAPLVPIRYAHEDTQIGGYHVPAGSEIAINI-YGCNMDKKR---WERPEDWWP 427
Query: 168 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQK 22
+RF + F +GK VC GA + S +A R++Q+
Sbjct: 428 ERFLDDGKYETSDLHKTMAFGAGKRVCAGAL--QASLMAGIAIGRLVQE 474
>At1g51350.1 68414.m05775 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 666
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -3
Query: 333 MLSQASPAPMTPLTPLSADPGILPQLQNIVSTVNLDCKLDLKKI 202
++S +SP L + GI+PQL+N+V+ LD K+ ++ +
Sbjct: 613 LISPSSPGAFDRHVKLR-NAGIIPQLKNMVNDACLDVKIRIRTV 655
>At1g17060.1 68414.m02075 cytochrome P450, putative 41% identical to
Cytochrome P450 [Catharanthus roseus] (gi|404690)
Length = 476
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 180 EYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKY-ARIIQK 22
E+ P+RFA + + R + L FSSG C G + S L A+ + A ++Q+
Sbjct: 394 EFKPERFANGVAGATKGRLSFLPFSSGPRTCIG---QNFSMLQAKLFLAMVLQR 444
>At5g20490.1 68418.m02435 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin-like protein
my5, common sunflower, PIR:T14279
Length = 1545
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 197 NAIFFKSNLQSRFT--VETMFCNCGKIPGSA 283
NA ++N SRF VE F NCG+I G+A
Sbjct: 217 NAKTLRNNNSSRFGKFVELQFDNCGRISGAA 247
>At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 491
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 424 LCNSATDDAASNSTKYDVSDDSCRKSIKS 338
LCN +D A K D+ D C K + S
Sbjct: 251 LCNKLGEDQAERGNKADIDQDECIKWLDS 279
>At1g18790.1 68414.m02342 RWP-RK domain-containing protein contains
Pfam profile: PF02042 RWP-RK domain
Length = 269
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -2
Query: 169 QTFCRCNYENK-GTENNSFNFL 107
++FC+ Y+ G ENNSF+FL
Sbjct: 2 KSFCKLEYDQVFGKENNSFSFL 23
>At5g08520.1 68418.m01011 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 354 GNLSSQQMLSQASPAPMTPLTPLSADPGI 268
GN S++Q +SQA P P TP P +
Sbjct: 222 GNKSAKQAVSQAPPGPPMYGTPAIGQPAV 250
>At3g26220.1 68416.m03271 cytochrome P450 family protein identical
to cytochrome P450 monooxygenase (CYP71B3) GB:D78602
[Arabidopsis thaliana] (Plant Mol. Biol. 37 (1), 39-52
(1998))
Length = 501
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 180 EYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 82
E+NP+RF M + L F SG+ +C G
Sbjct: 415 EFNPERFIDCPMDYKGNSFEMLPFGSGRKICPG 447
>At2g36800.1 68415.m04513 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 495
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -2
Query: 424 LCNSATDDAASNSTKYDVSDDSCRKSIKS 338
LCN D A K D+ D C K + S
Sbjct: 255 LCNKVGADKAERGNKSDIDQDECLKWLDS 283
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,923,867
Number of Sequences: 28952
Number of extensions: 205057
Number of successful extensions: 673
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -