Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L03
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...   160   8e-41
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   5.4  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    25   7.2  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   7.2  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    25   7.2  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   7.2  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    25   7.2  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    24   9.5  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score =  160 bits (389), Expect = 8e-41
 Identities = 69/119 (57%), Positives = 92/119 (77%)
 Frame = -2

Query: 431 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 252
           M+ Q+K++ SFEKRK E ++IR KYPDR+PVI EK  K+ +  +DKKKYLVPSDLTVGQF
Sbjct: 1   MRSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQF 60

Query: 251 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN*F 75
            ++IRKRI L PE A+F F++ ++PPT+A M ++Y+EH  ED FLYI +S EN +G  F
Sbjct: 61  VYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVF 119


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 51  NYLKVNNLELISIDIF-VGKC 110
           N  KVN ++LISI++F +G C
Sbjct: 71  NKSKVNEIQLISIEVFIIGIC 91


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 374 KIRRKYPDRVPVIVEKAPKARLGDLDKKKY 285
           KIR +YPDR+      AP  +  D   + Y
Sbjct: 154 KIREEYPDRMMATFSVAPAPKSSDTVVEPY 183


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
 Frame = +3

Query: 141 FLVERPHCCRC----GWNDIVHEEEKCVFR 218
           F+V   HCCRC    GW  +   E    F+
Sbjct: 65  FIVRHIHCCRCHTYIGWKYVSSYEPSQKFK 94


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +1

Query: 331 STITGTRSGYFLRIFSPSAFLFSNECSSLYWNFMXIF 441
           S +   R+G+ + +     ++F  EC   Y N + +F
Sbjct: 163 SPLPSPRTGHSMLLVDSKLWIFGGECQGKYLNDIHLF 199


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -2

Query: 410 EHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKK 291
           EH  + RKA  E  R K       + E   + RL D  K+
Sbjct: 111 EHDLQARKANLESYRAKLEKEYKTLAENKIQQRLSDGTKQ 150


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 186 IVHEEEKCVFRPQVNTFPDQEVE 254
           IVHE++K V    V+T PD+  E
Sbjct: 77  IVHEDDKLVGSDGVSTTPDEYFE 99


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 392 RKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDL 267
           RK   +K  +   D+   I EK    RLGD +KK     S++
Sbjct: 315 RKPSADKAEKT--DKTDAIAEKVSDIRLGDGEKKSSETDSEV 354


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -2

Query: 209 ALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDEN 93
           AL F  N  +PP       ++ E    DF L    S EN
Sbjct: 357 ALLFDQNEWLPPGEKQFDFVFDESQQIDFLLDTKLSAEN 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,839
Number of Sequences: 5004
Number of extensions: 37265
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)