Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L03
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   6.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.3  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 84  SIDIFVGKCYV 116
           SID+++G C+V
Sbjct: 282 SIDVYLGTCFV 292


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 84  SIDIFVGKCYV 116
           SID+++G C+V
Sbjct: 282 SIDVYLGTCFV 292


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 394 FSNECSSLYWNFMXI 438
           ++N C  LY+N + I
Sbjct: 347 YNNNCKKLYYNIINI 361


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 84  SIDIFVGKCYV 116
           SID+++G C+V
Sbjct: 221 SIDVYLGTCFV 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,184
Number of Sequences: 438
Number of extensions: 2410
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)