Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_L02
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        48   1e-06
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    47   2e-06
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    39   5e-04
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    35   0.008
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    32   0.059
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    30   0.24 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    29   0.42 
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    29   0.42 
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    29   0.55 
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    29   0.73 
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    27   2.9  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   5.1  

>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 26/74 (35%), Positives = 39/74 (52%)
 Frame = -3

Query: 601 IDGRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAIWEGHTDCVKTLLKNGA 422
           + G+ PLH AA  G+  V+ YL+++ A  N  D +G + L  A+ EGH D    L++ GA
Sbjct: 139 LQGQTPLHRAAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFALAEGHPDVGVELVRAGA 198

Query: 421 SKNGKTPDGTPYLE 380
               K  +    LE
Sbjct: 199 DTLRKDSENHTALE 212



 Score = 28.3 bits (60), Expect = 0.96
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 598 DGRVPLHYAADYGQTTVLNYLLNK-GADPNVVDKHGISVLLAAI 470
           D R PLH+A   G+   + +LL +    P+  D+ G + L+ +I
Sbjct: 36  DKRTPLHWACSVGKVNTIYFLLKQPNIKPDEKDEAGWTPLMISI 79


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 25/69 (36%), Positives = 38/69 (55%)
 Frame = -3

Query: 574 AADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAIWEGHTDCVKTLLKNGASKNGKTPDG 395
           AA  G+T V+   L+ G  PN  D++G + + AA+  GH+D +K L++ G   N +  DG
Sbjct: 11  AASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDG 70

Query: 394 TPYLEAAEK 368
              L   EK
Sbjct: 71  ETPLFVCEK 79



 Score = 34.7 bits (76), Expect = 0.011
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 607 ASIDGRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHG 494
           A  +G  P+H A  YG + +L  L+ +G D N+ D+ G
Sbjct: 33  ADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDG 70


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = -3

Query: 616 DVNASIDGRV---PLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAI 470
           DVNA I G +   P+H+AA  G    ++YL+  GADP + DK G + L  A+
Sbjct: 59  DVNA-IGGDLQAAPIHWAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLAV 109



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = -3

Query: 586 PLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAIWEGHTDCVKTLLKNG 425
           PL +A+ +G   + N LL  GAD    D+  ++ L  +I  G+  C+K +LK G
Sbjct: 137 PLMWASYHGNEPITNCLLRWGADVLATDEDKMTPLHWSIVGGNLKCMKLILKEG 190



 Score = 33.9 bits (74), Expect = 0.019
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
 Frame = -3

Query: 619 IDVNASIDG-RVPLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAI-WEGHTDCV 446
           IDVNA+ +G    LH+AA   Q  +  +LL  GAD N +   G  +  A I W      V
Sbjct: 25  IDVNATDEGGATALHWAALNQQIPICKFLLEHGADVNAI---GGDLQAAPIHWAAKRGSV 81

Query: 445 KT---LLKNGASKNGKTPDGTPYLEAA 374
           KT   L+++GA    K   G   L  A
Sbjct: 82  KTVHYLVQHGADPLLKDKQGFNCLHLA 108


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 22/58 (37%), Positives = 25/58 (43%)
 Frame = -3

Query: 595  GRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAIWEGHTDCVKTLLKNGA 422
            GR  LH  A  G +    +L N G D N  D  G + L  A    H D    LL NGA
Sbjct: 862  GRSLLHLTAACGLSNASTFLCNAGCDVNKRDALGYTPLHYASLYDHKDICVNLLSNGA 919



 Score = 31.5 bits (68), Expect = 0.10
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 595 GRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHG 494
           G  PLHYA+ Y    +   LL+ GA P+V+   G
Sbjct: 895 GYTPLHYASLYDHKDICVNLLSNGAKPDVIGASG 928


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 32.3 bits (70), Expect = 0.059
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -3

Query: 550 VLNYLLNKGADPNVVDKHGISVLLAAIWEGHTDCVKTLLKNGASKNGK 407
           ++  L+  G +PN VD    + L  A+     +CVK LLK GA+ + +
Sbjct: 349 IVEELILAGFNPNEVDASSNTALHTAVRYNRPECVKMLLKLGANPSAR 396


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 616 DVNASID--GRVPLHYAADYGQTTVLNYLLNKGAD 518
           DVNA ID  G   LH+AA  G   +++ LL  GA+
Sbjct: 228 DVNAGIDEDGHTALHWAAAMGNLEMMHALLQAGAN 262


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 610 NASIDGRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHG 494
           N  +    PLHYA       ++  LL  GADP +++ +G
Sbjct: 428 NVHLHTSTPLHYAVTQKNAKLVAKLLRNGADPAMLNGNG 466


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -3

Query: 619 IDVNASID--GRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAI 470
           +D++  ID  G   LH+AA   +  +L  L++KGA+P   +  G + L+ ++
Sbjct: 347 LDLDVPIDELGHAALHWAAAVAKMPLLQALIHKGANPLRGNLTGETALMRSV 398


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -3

Query: 562 GQTTVLNYLLNKGADP-NVVDKHGISVLLAAIWEGHTDCVKTLLKNGASKNGKTPDGTPY 386
           G   V+  L+     P N VD+   S L+ A   GH   VK LL+NGA     T  G   
Sbjct: 63  GDLEVVKSLVENYNTPINQVDQFDYSPLVLASLCGHEPVVKFLLENGALCERDTFQGERC 122

Query: 385 LEAAEKD 365
           L  A  D
Sbjct: 123 LYGALND 129


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 598 DGRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLL-AAIWEGHTDC 449
           DG   LH+A   G   ++  LL   AD  V ++   + L+ + I+  + DC
Sbjct: 247 DGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPLMRSVIFTNNYDC 297


>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 613 VNASID-GRVPLHYAADYGQTTVLNYLLNKGADPNV 509
           +NA  + G   +H+AA  G   +   LL  G DP++
Sbjct: 64  INAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHI 99


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -1

Query: 279  DSYKNSTIYFFKASNYNKSIIFVCSKV*WFERNLFLIMHP*SSF 148
            D  KN  +     S+YNK    +  K+ W ER   +++    S+
Sbjct: 939  DELKNRNLLMDDISSYNKQTTKLQEKIKWLERERSILIDELESY 982


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,701
Number of Sequences: 5004
Number of extensions: 48050
Number of successful extensions: 113
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)