Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K22
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    29   1.1  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    27   4.6  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   4.6  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    26   6.1  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    26   6.1  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    26   6.1  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   8.1  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   8.1  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   8.1  

>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 643 FF*VLCLFYNKRCYKRTI 696
           FF  LCL + K CY RTI
Sbjct: 264 FFSTLCLLFMKECYSRTI 281


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 266 YLGKCFAHKSALISKFPY--WKLLHTYRVHLAGWFSVLLSWL 147
           ++  CF HK  +  KF +    LL TY      W  V L WL
Sbjct: 454 FIYNCFIHKLVMGDKFEFLPLMLLSTYAAWGIFWSFVSLLWL 495


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 302 MSIL-GICLKLMYYLGKCFAHKSALIS-KFPYWKL-LHTY 192
           +SIL  ICL    YL KC+ H   L S +  + K   HTY
Sbjct: 60  LSILHNICLASFLYLSKCYYHTHILTSVRLDFCKSHAHTY 99


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 372 TYFKQFLKQNRPIPSFAYS 428
           ++F++F  QNR + SFAYS
Sbjct: 15  SFFEEFNSQNREMGSFAYS 33


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 372 TYFKQFLKQNRPIPSFAYS 428
           ++F++F  QNR + SFAYS
Sbjct: 15  SFFEEFNSQNREMGSFAYS 33


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 372 TYFKQFLKQNRPIPSFAYS 428
           ++F++F  QNR + SFAYS
Sbjct: 15  SFFEEFNSQNREMGSFAYS 33


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 345 KSGLGNLCAGGLYCNEHPWNLL 280
           +S  GNLC+  L  N+ P NLL
Sbjct: 646 RSNSGNLCSKDLLSNDSPSNLL 667


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 165 CIVELVGQEXKTHCMXARVHLE 100
           C+VE +G   KTHC   +   E
Sbjct: 38  CLVEWLGHSKKTHCELCKAKFE 59


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = +3

Query: 303 YNKGRQRISCLTHFFSYSCLCSATYFKQFLKQNRPIPSFAYS*HMAXXXXXXXXXXXPTK 482
           + K + R   LT+F  Y C+ S    ++ +K+  PI S      M            PTK
Sbjct: 488 FRKRKPRTFILTNFGRYLCVASDGEGRKTVKEEIPIKSVGMRCRMVKNNEHGWVVETPTK 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,591
Number of Sequences: 5004
Number of extensions: 65777
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)