Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K22
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    32   0.62 
AF022983-4|AAB69944.1|  387|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +2

Query: 152 NSTIQKTSLQGELYKYVVVSNRET-Y*SKLICVQNTFLNSTLILSKFQGCSLQ*RPPAHK 328
           N+TIQ +++  +L KYV+  ++ T Y S LIC+     N+ LI   ++   +Q R  A  
Sbjct: 2   NNTIQNSTITDDL-KYVMTLDKLTEYLSCLICLPGALCNAILIYLIWKRTPIQMRSYAIY 60

Query: 329 LPNPLFFIFVLMFCNLF 379
           + N   F F     + F
Sbjct: 61  ILNFALFDFATCIISFF 77


>AF022983-4|AAB69944.1|  387|Caenorhabditis elegans Hypothetical
           protein R13D11.4 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 561 FNFLTSPRTRN*KNLGFVRVLTSE*KHIFLSLVFI 665
           F+FLT PR    +N+    V  S    IF SL+F+
Sbjct: 192 FHFLTEPRPSRLQNINITSVCLSPFFPIFFSLLFV 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,422,054
Number of Sequences: 27780
Number of extensions: 372148
Number of successful extensions: 826
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)