Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K22
         (877 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46980.2 68416.m05102 transporter-related low similarity to b...    28   7.1  
At3g46980.1 68416.m05101 transporter-related low similarity to b...    28   7.1  
At2g31865.2 68415.m03893 poly (ADP-ribose) glycohydrolase (PARG)...    28   9.4  
At2g31865.1 68415.m03892 poly (ADP-ribose) glycohydrolase (PARG)...    28   9.4  

>At3g46980.2 68416.m05102 transporter-related low similarity to
           brain specific Na+-dependent inorganic phosphate
           cotransporter from [Rattus norvegicus] GI:507415, [Homo
           sapiens] GI:7328925, vesicular glutamate transporter 3
           from [Rattus norvegicus] GI:21685382; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 469

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 233 LISKFPYWKLLHTYRVHLAGWFSVLLSWL 147
           L+SK P W ++    +H  G+F V+LSW+
Sbjct: 333 LLSKMPTWAVIVANSMHSWGFF-VILSWM 360


>At3g46980.1 68416.m05101 transporter-related low similarity to
           brain specific Na+-dependent inorganic phosphate
           cotransporter from [Rattus norvegicus] GI:507415, [Homo
           sapiens] GI:7328925, vesicular glutamate transporter 3
           from [Rattus norvegicus] GI:21685382; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 533

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 233 LISKFPYWKLLHTYRVHLAGWFSVLLSWL 147
           L+SK P W ++    +H  G+F V+LSW+
Sbjct: 333 LLSKMPTWAVIVANSMHSWGFF-VILSWM 360


>At2g31865.2 68415.m03893 poly (ADP-ribose) glycohydrolase (PARG)
           family protein contains Pfam profile: PF05028 poly
           (ADP-ribose) glycohydrolase (PARG)
          Length = 532

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 300 HYNKGRQRISCLTHFFSYSCLCSATYFKQFLKQNRPI 410
           H  K   +I CL H+F   C    T F  F ++  P+
Sbjct: 186 HCTKQENKIKCLIHYFGRICRWMPTGFVSFERKILPL 222


>At2g31865.1 68415.m03892 poly (ADP-ribose) glycohydrolase (PARG)
           family protein contains Pfam profile: PF05028 poly
           (ADP-ribose) glycohydrolase (PARG)
          Length = 522

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 300 HYNKGRQRISCLTHFFSYSCLCSATYFKQFLKQNRPI 410
           H  K   +I CL H+F   C    T F  F ++  P+
Sbjct: 186 HCTKQENKIKCLIHYFGRICRWMPTGFVSFERKILPL 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,928,972
Number of Sequences: 28952
Number of extensions: 326052
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)