Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K21
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    29   0.36 
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    28   1.1  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   4.4  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   5.9  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 201 NSSSIPGYHKDNEDPWSPHQYQVASDNHHSPYLQDREYTPLQS 329
           N + I  +HKD E    PH Y +AS  +H+     +  T + S
Sbjct: 116 NDNLIKHFHKDPEAAKVPHLYSIASSCYHALTTDSKNQTIIVS 158


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -2

Query: 516 YMFLNVKMSSLLKRALFNNSQSIRKTAALFCNATRNHWNYQYQPGPYPKTPEE 358
           + +L+ + +S++  A + ++ S   TA + C AT + W         P TP E
Sbjct: 315 FPYLSSRYASVIPSASYESTMSATLTATMSCQATNSAW---MAATSLPPTPSE 364


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = -2

Query: 510 FLNVKMSSLLKRALFNNSQSIRKTAALFCNATRNHWNYQYQPGPYP 373
           F+   MSSLLK                 C    NHW+    P P+P
Sbjct: 211 FIESVMSSLLKGGTVLLPVDAASRVLELCCILDNHWSASQPPLPFP 256


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 117  HQWTWF--LGTLGGFALLMVFLEDYKIGRP 34
            + WT +  + TLG F L +VF+  Y +  P
Sbjct: 1109 NHWTQYTVIATLGSFLLWIVFMPIYAVAAP 1138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,692
Number of Sequences: 5004
Number of extensions: 50707
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)