Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K20
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    27   1.1  
SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        25   4.6  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   4.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.1  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.1  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    25   8.0  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   8.0  

>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
 Frame = -3

Query: 425 FIMFLLVSLMALAASKSLFEKSCPENAHTTLNPC-VPTCADPELKHTSCVTAFIATCHCD 249
           F++FLL  L   A S   F+ + PE+      P   P      L H      F+      
Sbjct: 32  FLLFLLPVLFVFARSMIEFDDTYPESVSKRARPSQKPPLRSTHLPHLLIFALFVGKHIAC 91

Query: 248 SGYLFNSEGKCVPVAE 201
             +L  S   C+P +E
Sbjct: 92  FHHLLLSSLPCLPRSE 107


>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 177 IASASYSTFGNGHAFSLRVEEVSRITVAGCDESRHATGVF 296
           I S S S FG+G AF L  E      V G  +  +  G+F
Sbjct: 92  INSESTSLFGDGLAFFLAAERAKPGPVFGFTDKFNGYGIF 131


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -1

Query: 199 VEYDAEAISTDFD----LYFIKKVYLTITKLY 116
           V Y+ E +STDFD    LYF +  Y  +  +Y
Sbjct: 668 VNYNPETVSTDFDECERLYFEELSYERVMDIY 699


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 319  GTQGFNVV*AFSGHDFSNKLLLAARAIR 402
            G Q  N++  +  H+FSN+ LL  + IR
Sbjct: 2301 GCQFENIICPYFNHEFSNEQLLQQKFIR 2328


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 342 HDIEPLRADLCRPGIETHQLRDGFHRN 262
           H   PLR  +C PG +T Q+     RN
Sbjct: 810 HPTHPLRVTVCLPGSKTIQVARRSFRN 836


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 267 DESRHATGVFQFRVCTGRHAGVQCRVSIF-RTRFLEQALTGCESHQRHEQKHDEVMFGGH 443
           D   HA   +   + T  H+  + +V+ F R R   +++T C   Q +E  HD      H
Sbjct: 199 DAGAHAEAYYSLPI-TYFHSKAEKKVTEFLRNRNWSRSITECSILQNNEFLHDSEKLIDH 257

Query: 444 L 446
           L
Sbjct: 258 L 258


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 271 SSQPATVILDTSSTRRENACPLP 203
           S  PATV++ T+S     +CP P
Sbjct: 169 SCNPATVLIVTTSGSTSTSCPPP 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,544
Number of Sequences: 5004
Number of extensions: 38221
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)