Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_K20
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0091 + 646299-649082 32 0.28
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564... 30 1.1
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244... 29 1.5
09_06_0180 - 21385655-21386017,21386399-21386623,21386859-21387305 28 3.5
01_03_0013 + 11645786-11645853,11646674-11646802,11646906-116469... 28 3.5
01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,317... 28 4.6
08_01_0422 + 3737429-3738006,3738083-3738824 27 8.0
08_01_0153 - 1200121-1200465,1201693-1202920,1204517-1204602,120... 27 8.0
05_07_0024 + 27125474-27125764 27 8.0
05_01_0245 - 1829921-1830359,1830449-1831002,1832016-1832144,183... 27 8.0
04_04_0297 - 24219497-24219853,24221242-24222414 27 8.0
>02_01_0091 + 646299-649082
Length = 927
Score = 31.9 bits (69), Expect = 0.28
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 336 CRVSIFRTRFLEQALTGCESHQRHEQKHDEVMFGGHLNDVLRT 464
C+V + LEQ L S Q+HDE FG +N VL T
Sbjct: 560 CQVDSQNRKVLEQHLACAASEYPLRQEHDESYFGFSMNSVLMT 602
>05_07_0028 +
27153663-27153932,27154966-27155175,27156220-27156414,
27156491-27156840,27157198-27157423,27157524-27157692,
27158145-27158990,27159647-27159818,27159934-27160052,
27160117-27160155,27161033-27161157,27161250-27161309,
27161471-27161542,27161980-27162114
Length = 995
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = -3
Query: 473 RPMSSQHIVKMAAKHYFIMFLLVSLMALAASKSLFEKSCPENAHTTLNPCVPTCADPELK 294
R +S + K Y I L+ S A KS +S N T L C P+ DPE +
Sbjct: 790 RKVSRDSTLDPRRKAYLIQNLMTSRWIAAQQKSPQPQSEDRNGCTVLPGCCPSYRDPENQ 849
Query: 293 HTSC 282
C
Sbjct: 850 IFGC 853
>10_08_0655 -
19621717-19622594,19623186-19623227,19624323-19624479,
19625333-19625405,19625483-19625595
Length = 420
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 404 SLMALAASKSLFEKSCPENAHTTLNPCVPTCADPELKHT 288
S +AL+ SK + E + PE L C+ P +HT
Sbjct: 260 STVALSVSKVMGEDAKPETVSEALTACIEETCSPAYRHT 298
>09_06_0180 - 21385655-21386017,21386399-21386623,21386859-21387305
Length = 344
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 204 GNGHAFSLRVEEVSRITVAGCDESRHATGVFQFR-VCTGRHAG 329
GNG AF + + V R+TV + F VC GRH+G
Sbjct: 123 GNGEAFGAQKDGVWRLTVKDLKIGNIEVFLVDFLIVCIGRHSG 165
>01_03_0013 +
11645786-11645853,11646674-11646802,11646906-11646945,
11647075-11647191
Length = 117
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 172 LK*PPRHIQHSATGTHFPSELKRYPESQWQVAMKAV 279
LK R + HF E RYP S+W++ + A+
Sbjct: 38 LKVEERSVVEQGAEGHFGGEASRYPFSRWRLGLAAL 73
>01_01_0420 +
3175544-3176696,3177035-3178581,3179623-3179688,
3179892-3179999
Length = 957
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -1
Query: 151 IKKVYLTITKLYLRP*NLYLQGAFTL*MAMGSSNYLTPSGLLARPDREA 5
+ + LT T R L LQ +F L + +SN +TP+G+ RPD+ A
Sbjct: 1 MSSIILTQTPSVPRRLLLLLQLSFLL-LLSSASNAVTPAGVPCRPDQAA 48
>08_01_0422 + 3737429-3738006,3738083-3738824
Length = 439
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 476 GRPMSSQHIVKMAAKHYFIMFLLVSLMALAASKSLFEKSC-PENAHTT 336
G SS+ +V++A +H M +ALAA+ L K+C P TT
Sbjct: 373 GESRSSRPLVQLAMRHVTCMEDAAMFVALAAAVDLSVKACRPFRRKTT 420
>08_01_0153 -
1200121-1200465,1201693-1202920,1204517-1204602,
1205145-1205272,1205957-1205969
Length = 599
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 423 EVMFGGHLNDVLRTHRPAEF 482
EVMF G L +VL +PAEF
Sbjct: 445 EVMFLGELEEVLEATQPAEF 464
>05_07_0024 + 27125474-27125764
Length = 96
Score = 27.1 bits (57), Expect = 8.0
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = -3
Query: 443 MAAKHYFIMFLLVSLMALAASKSLFEKSCPENAHTTLNPCVPTCADPELKHTSC---VTA 273
MAAK + LLV ++A+AA+ E + T L PC P +C + A
Sbjct: 1 MAAKASAVFVLLVVVLAVAAAMRGAEAA--TCTPTQLTPCAPAIVGNSPPTAACCGKLKA 58
Query: 272 FIATCHC 252
A+C C
Sbjct: 59 HPASCFC 65
>05_01_0245 -
1829921-1830359,1830449-1831002,1832016-1832144,
1832249-1832339,1832646-1832758,1832836-1833079,
1833193-1833281,1833357-1833424,1833790-1833874,
1834038-1834190
Length = 654
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 70 MAMGSSNYLTPSGLLARPDRE 8
+ MG Y TPSG+ RPDR+
Sbjct: 490 LIMGHRLYQTPSGITYRPDRK 510
>04_04_0297 - 24219497-24219853,24221242-24222414
Length = 509
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 423 EVMFGGHLNDVLRTHRPAEF 482
EVMF G L +VL +PAEF
Sbjct: 351 EVMFLGELEEVLEATQPAEF 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,882,721
Number of Sequences: 37544
Number of extensions: 254928
Number of successful extensions: 594
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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