Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K18
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       170   1e-42
SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       167   1e-41
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                       128   5e-30

>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  170 bits (413), Expect = 1e-42
 Identities = 92/225 (40%), Positives = 126/225 (56%), Gaps = 2/225 (0%)
 Frame = -3

Query: 679 NEFGRPIMAT*SNLNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXISLFFNKYINR 500
           N+FGR I      L+LQ+ A P++E+                       I     K   R
Sbjct: 3   NQFGRDIPEP-WQLSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYR 61

Query: 499 FLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSDF 320
           +L++G ++E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD+
Sbjct: 62  YLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDY 121

Query: 319 NN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXITATDVIHS*TIPSLGVK 146
            +  +EFDSY++P+ ++   +FRLL+VD              ITA DVIHS  +P+L VK
Sbjct: 122 QSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVK 181

Query: 145 VDANPGRLNQTNXFINRPGIFFGQCXEICGAKQSLRPIGIESISI 11
           +DA PGRLNQT  FI RPG+F+GQC EICGA  S  PI IE++S+
Sbjct: 182 MDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVSL 226


>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  167 bits (405), Expect = 1e-41
 Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 2/223 (0%)
 Frame = -3

Query: 673 FGRPIMAT*SNLNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXISLFFNKYINRFL 494
           FGR I      L+LQ+ A P++E+                       I     K   R+L
Sbjct: 5   FGRDIPEP-WQLSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYL 63

Query: 493 LEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSDFNN 314
           ++G ++E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD+ +
Sbjct: 64  VDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQS 123

Query: 313 --IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXITATDVIHS*TIPSLGVKVD 140
             +EFDSY++P+ ++   +FRLL+VD              ITA DVIHS  +P+L VK+D
Sbjct: 124 ETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMD 183

Query: 139 ANPGRLNQTNXFINRPGIFFGQCXEICGAKQSLRPIGIESISI 11
           A PGRLNQT  FI RPG+F+GQC EICGA  S  PI IE++S+
Sbjct: 184 AVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVSL 226


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score =  128 bits (308), Expect = 5e-30
 Identities = 75/201 (37%), Positives = 105/201 (52%), Gaps = 2/201 (0%)
 Frame = -3

Query: 679 NEFGRPIMAT*SNLNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXISLFFNKYINR 500
           N+FGR I      L+LQ+ A P++E+                       I     K   R
Sbjct: 3   NQFGRDIPEP-WQLSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYR 61

Query: 499 FLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSDF 320
           +L++G ++E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD+
Sbjct: 62  YLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDY 121

Query: 319 NN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXITATDVIHS*TIPSLGVK 146
            +  +EFDSY++P+ ++   +FRLL+VD              ITA DVIHS  +P+L VK
Sbjct: 122 QSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVK 181

Query: 145 VDANPGRLNQTNXFINRPGIF 83
           +DA PGRLNQT  FI +   F
Sbjct: 182 MDAVPGRLNQTGFFIKKTWSF 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,382,095
Number of Sequences: 59808
Number of extensions: 191802
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)