Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K16
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    32   0.11 
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    31   0.25 
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    27   2.3  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.3  

>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 763 PVLSSAIGLSFTYFLYAGIVTICMVVVWIMLPETKDXTLQEIEDRF 626
           P +++AIG    Y +YA I      +++ +  ETK  TL+E+ D +
Sbjct: 423 PFINNAIGFKLGY-IYACINLFSSFMIFFLAKETKGLTLEEVNDLY 467


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 763 PVLSSAIGLSFTYFLYAGIVTICMVVVWIMLPETKDXTLQEIEDRF 626
           P +S++IG    Y +YA I       +++M  ETK  TL+E+ + +
Sbjct: 423 PFISNSIGFKLGY-IYACINMTSAFQIFLMAKETKGLTLEEVNELY 467


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 209 NIQSSLDISDHGNCNNVPIHNI 274
           +IQ+SLD+  HGN  +   HN+
Sbjct: 66  HIQNSLDLYSHGNSGSQKTHNV 87


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 332 NLNYLYDLISWLLF*FNYFQCYE*VHYYSFRGH 234
           N  Y +  +SWL F F  F  Y  + YY    H
Sbjct: 137 NRFYAHVFLSWLFFGFTIFIIYRELRYYVIFRH 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,837
Number of Sequences: 5004
Number of extensions: 56605
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)