Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K16
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    40   0.003
SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7)                  38   0.012
SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)                  36   0.037
SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_54473| Best HMM Match : DLIC (HMM E-Value=0)                        28   9.8  

>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = -3

Query: 772 KCFPVLSSAIGLSFTYFLYAGIVTICMVVVWIMLPETKDXTLQEIEDRFRGYTA---EDV 602
           K F  +  AI +  TY+ Y G+  +  + V + +PETK  TL++IE  F G      E++
Sbjct: 450 KTFVNIEDAITIQGTYWFYGGLSFLGFLFVLMFVPETKGKTLEQIERLFDGTLVTPREEI 509

Query: 601 KSS 593
           +SS
Sbjct: 510 QSS 512


>SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7)
          Length = 124

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -3

Query: 757 LSSAIGLSFTYFLYAGIVTICMVVVWIMLPETKDXTLQEIEDRFRGYTAEDV 602
           L  +IG S T+F Y  I  I +V ++  +PETK+ TL++I        A+ +
Sbjct: 40  LLGSIGTSGTFFFYGLICVIAIVFIYKYVPETKNKTLEQISAELNSKKAKSL 91


>SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)
          Length = 201

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 733 FTYFLYAGIVTICMVVVWIMLPETKDXTLQEIEDRFRG 620
           +T+ ++  +V I     +  +PETK  T+++I D FRG
Sbjct: 143 YTFIVFMALVAIFWTFTFFFVPETKGRTIEDITDHFRG 180


>SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1492

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 209  NIQSSLDISDHGNCNNVPIHNIGNN 283
            +++  LD+S  GN NN  ++N+G N
Sbjct: 1094 SLRVGLDLSVSGNANNTVVNNVGRN 1118


>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
          Length = 1401

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +2

Query: 590  LRTLDILSSVTPKPILYLLQGXVFSFW--*HNPNYHHANR--HNTSVQEVRER 736
            LR++D L  VTPK  L       F+FW   HN N   A R  +N +V  V +R
Sbjct: 1163 LRSIDRLLLVTPKLFLTGFLAAGFTFWNQQHNVNMGRALRGYNNIAVMTVFQR 1215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,733,315
Number of Sequences: 59808
Number of extensions: 371410
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)