Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_K12
(501 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a ... 144 1e-34
BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein. 144 1e-34
BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a ... 144 1e-34
BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a ... 144 1e-34
AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting ... 144 1e-34
X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for ... 142 8e-34
AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a ... 118 1e-26
X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a pr... 38 0.015
AK126039-1|BAC86408.1| 214|Homo sapiens protein ( Homo sapiens ... 30 3.9
X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein. 30 5.2
AM082137-1|CAL06283.1| 101|Homo sapiens immunoglobulin heavy ch... 29 9.1
AJ579146-1|CAE45400.1| 120|Homo sapiens immunoglobulin heavy ch... 29 9.1
AF043976-1|AAD23734.1| 262|Homo sapiens CLCA homolog protein. 29 9.1
>BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 144 bits (350), Expect = 1e-34
Identities = 66/101 (65%), Positives = 78/101 (77%)
Frame = -3
Query: 307 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 128
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 127 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHK 5
GK K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH+
Sbjct: 62 --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHR 100
>BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein.
Length = 110
Score = 144 bits (350), Expect = 1e-34
Identities = 66/101 (65%), Positives = 78/101 (77%)
Frame = -3
Query: 307 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 128
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 127 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHK 5
GK K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH+
Sbjct: 62 --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHR 100
>BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 144 bits (350), Expect = 1e-34
Identities = 66/101 (65%), Positives = 78/101 (77%)
Frame = -3
Query: 307 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 128
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 127 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHK 5
GK K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH+
Sbjct: 62 --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHR 100
>BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 144 bits (350), Expect = 1e-34
Identities = 66/101 (65%), Positives = 78/101 (77%)
Frame = -3
Query: 307 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 128
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 127 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHK 5
GK K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH+
Sbjct: 62 --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHR 100
>AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting
protein 33 protein.
Length = 110
Score = 144 bits (350), Expect = 1e-34
Identities = 66/101 (65%), Positives = 78/101 (77%)
Frame = -3
Query: 307 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 128
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 127 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHK 5
GK K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH+
Sbjct: 62 --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHR 100
>X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for
ribosomal protein L35a. ).
Length = 110
Score = 142 bits (343), Expect = 8e-34
Identities = 65/101 (64%), Positives = 77/101 (76%)
Frame = -3
Query: 307 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 128
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 127 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHK 5
GK K R IWGKVTR HGNSG V AKF+SNLPA+A+GH+
Sbjct: 62 --GKPNKTRVIWGKVTRAHGNSGMVLAKFRSNLPAKAIGHR 100
>AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a
pseudogene 3 protein.
Length = 96
Score = 118 bits (284), Expect = 1e-26
Identities = 57/97 (58%), Positives = 68/97 (70%)
Frame = -3
Query: 307 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 128
GRL++K+ F GYKR L+NQ E+TALLK+EG +++ FY GK C VY+AK T IPG
Sbjct: 2 GRLWSKSFFAGYKRSLQNQREHTALLKIEGGYAQDETEFYLGKRCACVYKAKSNTMIPG- 60
Query: 127 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQA 17
K K R IWGKVTR H NSG V AKF SNLPA+A
Sbjct: 61 --SKPNKSRVIWGKVTRAHRNSGMVAAKFHSNLPAKA 95
>X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a
protein.
Length = 21
Score = 38.3 bits (85), Expect = 0.015
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = -3
Query: 307 GRLYAKAVFTGYKRGLRNQ 251
GRL++KA+F GYKRGLRNQ
Sbjct: 3 GRLWSKAIFAGYKRGLRNQ 21
>AK126039-1|BAC86408.1| 214|Homo sapiens protein ( Homo sapiens
cDNA FLJ44051 fis, clone TESTI4033433. ).
Length = 214
Score = 30.3 bits (65), Expect = 3.9
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 55 HCQSCHVGGSPCPR*HAAWFFCHGDLRELVSSS*LCTHRRNACQ 186
HC C GG P P+ H AW + S + HRR+ CQ
Sbjct: 136 HCSHCP-GGQPGPQLHRAWTVWSWAVPSSASRACGDGHRRSTCQ 178
>X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein.
Length = 1618
Score = 29.9 bits (64), Expect = 5.2
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 80 GHLAPDSTQLGFF-ATGTSGNWCPLLSSVH 166
G PDST LGF+ + TS W PL S H
Sbjct: 1291 GETLPDSTPLGFYLRSPTSPRWTPLESRGH 1320
>AM082137-1|CAL06283.1| 101|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 101
Score = 29.1 bits (62), Expect = 9.1
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 325 ASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 179
A R GR Y TG R+ +NT L++ G + + AV+Y K
Sbjct: 53 AMSGRGGRTYYAGSVTGRFSISRDNSKNTLYLQMNGLRVEDTAVYYCAK 101
>AJ579146-1|CAE45400.1| 120|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 120
Score = 29.1 bits (62), Expect = 9.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 259 RNQHENTALLKVEGAKDRNDAVFYAGKHCVY 167
R+ ENT L++ + + AV+Y ++C Y
Sbjct: 72 RDNSENTLYLQMNSLRAEDTAVYYCARYCTY 102
>AF043976-1|AAD23734.1| 262|Homo sapiens CLCA homolog protein.
Length = 262
Score = 29.1 bits (62), Expect = 9.1
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -1
Query: 306 AGCTQRPYSQD--ISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRGHQFP 133
A C RP+ +D + A T P S+ ++ V MQ+ L S+ CTE + P
Sbjct: 203 ASCIARPFRRDSQTGLYEAKCTFIPKRSQTAKESIVFMQN--LDSVTEFCTEKTHNKEAP 260
Query: 132 EV 127
+
Sbjct: 261 NL 262
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,560,960
Number of Sequences: 237096
Number of extensions: 1746771
Number of successful extensions: 13076
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13069
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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