Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K12
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...   132   1e-31
AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    30   1.1  
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    30   1.1  
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    29   1.4  
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    29   1.4  
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    27   5.8  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    27   5.8  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score =  132 bits (320), Expect = 1e-31
 Identities = 62/111 (55%), Positives = 80/111 (72%)
 Frame = -3

Query: 337 VLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYR 158
           V R+ S P  GRLY KA+FTG+KRGLR Q E+T+LLK+EG  ++ DA FYAGK  VY+Y+
Sbjct: 6   VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYK 65

Query: 157 AKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHK 5
           A  +T   G      T+ RAIWGK+TRPHGN+G+VRAKF  N+P  A+G +
Sbjct: 66  AHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKR 114


>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9b protein.
          Length = 908

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 35  RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 190
           ++ L   T   + W GHLA ++ Q+   A  +  NW  ++ +    DA+LA +
Sbjct: 839 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 891


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
            protein Y110A7A.9a protein.
          Length = 1019

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 35   RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 190
            ++ L   T   + W GHLA ++ Q+   A  +  NW  ++ +    DA+LA +
Sbjct: 950  KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 1002


>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 256 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 107
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 256 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 107
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 256 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 107
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 256 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 107
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 256 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 107
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 256 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 107
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical
           protein F58A4.1 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 25/82 (30%), Positives = 34/82 (41%)
 Frame = -1

Query: 324 HQSPATAGCTQRPYSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 145
           H SP+T+  T    S   S   +TST TP +   +   T    S   +S  +  T  +  
Sbjct: 94  HSSPSTSTSTSTSTSTSTSTSRSTSTVTPTT---RSSTTTTATSTPTSSSKATTTSAQIT 150

Query: 144 HQFPEVPVAKKPSCVLSGAR*P 79
              PE+P A  P  VL G   P
Sbjct: 151 Q--PEIPQA-APGTVLKGEEFP 169


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
           protein Y39A1B.3 protein.
          Length = 1499

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -1

Query: 285 YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 145
           +S D+ +V+A S    L+ RL    TV +Q ++  SIAS   + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
           compensation protein protein.
          Length = 1455

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -1

Query: 285 YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 145
           +S D+ +V+A S    L+ RL    TV +Q ++  SIAS   + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,964,554
Number of Sequences: 27780
Number of extensions: 225714
Number of successful extensions: 534
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)