Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K12
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si...    98   3e-21
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si...    98   3e-21
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id...    97   8e-21
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri...    96   1e-20
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ...    29   1.3  
At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family prot...    27   5.4  
At5g51195.1 68418.m06348 hypothetical protein                          27   7.1  
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea...    27   7.1  
At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3...    27   9.4  

>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
           similar to ribosomal protein L33B GB:NP_014877 from
           [Saccharomyces cerevisiae]
          Length = 112

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 46/100 (46%), Positives = 62/100 (62%)
 Frame = -3

Query: 304 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 125
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y GK   Y+Y+AK +       
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKK------ 64

Query: 124 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHK 5
               +  R IWGKVTRPHGNSG VRAKF SNLP ++MG +
Sbjct: 65  --NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSR 102


>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
           similar to ribosomal protein L35a GI:57118 from [Rattus
           norvegicus]
          Length = 112

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 47/100 (47%), Positives = 61/100 (61%)
 Frame = -3

Query: 304 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 125
           RLY +    GYKR   NQ+ NT+L++VEG     +  +Y GK   Y+Y+AK +       
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKK------ 64

Query: 124 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHK 5
               +  R IWGKVTRPHGNSG VRAKF SNLP ++MG +
Sbjct: 65  --NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSR 102


>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
           identical to GB:CAB81600 from [Arabidopsis thaliana]
          Length = 111

 Score = 96.7 bits (230), Expect = 8e-21
 Identities = 45/98 (45%), Positives = 61/98 (62%)
 Frame = -3

Query: 304 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 125
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y GK   Y+Y+AK +       
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63

Query: 124 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 11
               +  R IWGKVTRPHGNSG VR+KF SNLP ++MG
Sbjct: 64  --NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMG 99


>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
           ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
           PIR:S44069
          Length = 111

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 45/98 (45%), Positives = 61/98 (62%)
 Frame = -3

Query: 304 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 125
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y GK   Y+Y+AK +       
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63

Query: 124 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 11
               +  R IWGKVTRPHGNSG VR+KF SNLP ++MG
Sbjct: 64  --NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMG 99


>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
           PF04424: Protein of unknown function (DUF544)
          Length = 682

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -3

Query: 223 EGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAK 44
           EG K+R   VF+   H   +++ +    +    +G   +   +W K+   +G++  + A 
Sbjct: 508 EGLKERELCVFFRNNHFCTMFKYEGELYLLATDQGYLNQPDLVWEKLNEVNGDTAFMTAT 567

Query: 43  FK 38
           FK
Sbjct: 568 FK 569


>At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family protein
           similar to early nodulin ENOD8 [Medicago sativa]
           GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
           carota] GI:1911765, lanatoside 15'-O-acetylesterase
           [Digitalis lanata] GI:3688284; contains InterPro Entry
           IPR001087 Lipolytic enzyme, G-D-S-L family
          Length = 379

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 50  SDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 145
           SDT  ++   G L   S ++ FF + TSG +C
Sbjct: 45  SDTGELSSGLGFLPQPSYEITFFRSPTSGRFC 76


>At5g51195.1 68418.m06348 hypothetical protein
          Length = 267

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 29  EVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 145
           E++ E+ S+      W      D T   FFA+  SG WC
Sbjct: 209 EIQAEMESEDVAATFWID----DETHDDFFASSKSGWWC 243


>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400); some
           similarity to a group of proteins with homology to
           mammalian apoptosis regulators identified in zebrafish
           (PUBMED:10917738)Apaf-1(gi:7677507)
          Length = 537

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 17  SLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSS 160
           +LGRE  L +G D        G + P+ST+L + A+ ++   C  ++S
Sbjct: 313 ALGRERVLSVGRDRTMQLYKVGIVVPESTRLIYRASESNFECCCFVNS 360


>At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3)
           family protein contains Pfam profile: PF05879 root hair
           defective 3 GTP-binding protein    (RHD3) family
          Length = 834

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 172 VYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKF 41
           ++V R K +TPI    R  +  ++ IW  V +P  +  +   +F
Sbjct: 167 LFVIRDKTKTPIELLERALREDIQKIWDSVRKPEAHKNTPLNEF 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,595,104
Number of Sequences: 28952
Number of extensions: 214654
Number of successful extensions: 588
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)