Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K11
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   0.76 
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    26   2.3  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    25   5.4  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   5.4  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    24   7.1  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.5 bits (58), Expect = 0.76
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 201  EAPWLRCLSSLCKLNQLASKRSFC*CSYL 287
            +AP L  LS++C  +  + KR FC  +YL
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFCKENYL 995


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 342 LLSGCGNQENFNLFL-RIKVNKNINKMSAWRQAGLT 238
           LL+G   Q+  N +  +I + K I+ +  WRQ GLT
Sbjct: 261 LLTGPDYQKFVNSYHEQITLKKQISDLQEWRQMGLT 296


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = -1

Query: 258 WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESH-VRVTPWANGRPAHEKD*VRGT 82
           WR+AG+ Y   S     V R +L        L+ D S  V++    +G P  +       
Sbjct: 168 WRRAGIKYRKNSIYIDIVERMNLLISSTGNVLRSDVSGVVKMRAMLSGMPECQFGLNDKL 227

Query: 81  SRKLFQSEEGRVNXHARKSSNV 16
             KL QSE    + ++R  S+V
Sbjct: 228 DFKLKQSESKSKSNNSRNPSSV 249


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 132 PWANGRPAHEKD*VRGTSRKLFQSE 58
           P+A  RP H+K+   G  + +F +E
Sbjct: 536 PYAEDRPRHKKNPELGNKKSIFANE 560


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 161 NVTNLTSESHLGPTDDLHMKRTKSEXPPESCSKVKKEE 48
           N T  T+E H+G T+       K   PP   + +  +E
Sbjct: 228 NATAQTAEGHMGATNMTVDNMNKPSIPPNGNTSILMQE 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,495,042
Number of Sequences: 5004
Number of extensions: 26157
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)