Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K11
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042           59   1e-09
04_01_0024 + 344621-344830,344926-345705                               27   6.7  
03_06_0451 + 34025048-34027099,34028210-34028242                       26   8.9  

>08_01_0930 - 9173245-9173305,9173438-9173504,9173856-9174042
          Length = 104

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 22/48 (45%), Positives = 35/48 (72%)
 Frame = -1

Query: 258 WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGR 115
           WR AG+TYI YSN+ A ++RR LK+  ++EA  R++ H  ++ WA+G+
Sbjct: 11  WRAAGMTYIGYSNVCAALVRRCLKEPHKSEAASREKVHFAISKWADGK 58


>04_01_0024 + 344621-344830,344926-345705
          Length = 329

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -1

Query: 219 IAAKVLRRSLKQEFRAEALKRDESHVRV-TPWAN---GRPAHEKD*VRGTSRKLFQS 61
           +   V RR +KQE RAEA K  +    V  PW      +P + KD     S K+  S
Sbjct: 273 VTVLVERRMVKQEHRAEAYKLYQKRTSVWIPWFRKPVPQPYNHKDSSNQNSLKISHS 329


>03_06_0451 + 34025048-34027099,34028210-34028242
          Length = 694

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 24/72 (33%), Positives = 38/72 (52%)
 Frame = -1

Query: 345 TLLSGCGNQENFNLFLRIKVNKNINKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEA 166
           TLLS C  Q+NF++  RI   K + ++     A  +Y+  SNI A   R     E R +A
Sbjct: 514 TLLSACKTQKNFDMAERIA--KRVIELDPHDSA--SYVLLSNIRATSRRWGDVSEVR-KA 568

Query: 165 LKRDESHVRVTP 130
           ++  +++VR  P
Sbjct: 569 MR--DNNVRKEP 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,665,782
Number of Sequences: 37544
Number of extensions: 165931
Number of successful extensions: 347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)