Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K09
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965...    83   3e-16
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343...    78   8e-15
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443...    73   2e-13
03_05_0830 + 28034179-28035492                                         29   3.8  

>01_01_1199 -
           9657169-9657254,9657369-9657395,9657485-9657553,
           9657922-9658023,9659895-9660000,9660145-9660165
          Length = 136

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 39/56 (69%), Positives = 46/56 (82%)
 Frame = -2

Query: 597 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 430
           MVAAKK KK+ ++IN++L LVMKSGKY LGYK  L+TLR  KAKLVII+ N PPLR
Sbjct: 1   MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLR 56



 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = -1

Query: 106 RQXEIEYYALLAKTGVHHYSGNNIELGTACGXYYR 2
           R+ EIEYYA+LAK  VHH+ GNN++LGTACG Y+R
Sbjct: 56  RKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFR 90


>05_05_0300 +
           23932947-23933196,23934022-23934123,23934249-23934317,
           23934406-23934446
          Length = 153

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 43/86 (50%), Positives = 57/86 (66%), Gaps = 5/86 (5%)
 Frame = -2

Query: 672 IDLSFEPLLFHL--CSW*GFISIY---APKMVAAKKQKKTIESINSRLALVMKSGKYCLG 508
           ID +  PLL  L  C+   F++++   +   V A  QKK+ ++IN++L LVMKSGKY LG
Sbjct: 12  IDCASLPLLVALSRCASHHFVAMFLLVSDWWVVAMMQKKSTDNINNKLQLVMKSGKYTLG 71

Query: 507 YKQTLKTLRQGKAKLVIIAKNAPPLR 430
           YK  LKTLR  K KL+I+A N PPLR
Sbjct: 72  YKTVLKTLRNSKGKLIILANNCPPLR 97



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 24/35 (68%), Positives = 29/35 (82%)
 Frame = -1

Query: 106 RQXEIEYYALLAKTGVHHYSGNNIELGTACGXYYR 2
           R+ EIEYYA+L K  VHH+ GNN++LGTACG YYR
Sbjct: 97  RKSEIEYYAMLGKVSVHHFHGNNVDLGTACGKYYR 131


>01_06_1103 -
           34543915-34543955,34544069-34544137,34544294-34544395,
           34545603-34545708,34545998-34546079,34546850-34547142
          Length = 230

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/49 (69%), Positives = 37/49 (75%)
 Frame = -2

Query: 576 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 430
           KK  E IN++L LVMKSGKY LGYK  LKTLR  K KLVI+A N PPLR
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLR 174



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 23/35 (65%), Positives = 30/35 (85%)
 Frame = -1

Query: 106 RQXEIEYYALLAKTGVHHYSGNNIELGTACGXYYR 2
           R+ EIEYYA+L K  V+H++GNN++LGTACG YYR
Sbjct: 174 RKSEIEYYAMLGKVSVYHFNGNNVDLGTACGKYYR 208


>03_05_0830 + 28034179-28035492
          Length = 437

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 528 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 445
           +GKY  G   TLKTL  G  + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,234,583
Number of Sequences: 37544
Number of extensions: 307578
Number of successful extensions: 530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)