Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K08
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...   117   2e-27
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    28   1.4  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   5.5  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   5.5  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   9.6  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score =  117 bits (282), Expect = 2e-27
 Identities = 71/205 (34%), Positives = 107/205 (52%), Gaps = 2/205 (0%)
 Frame = -2

Query: 743 QVEYVCEKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYG 564
           Q++ VC+ +  +  LSNGF  +G SQG  F+RA+ Q C     +I+++++LG  H GI  
Sbjct: 82  QLDEVCDLIGNEDSLSNGFYALGLSQGGLFLRALAQTC--DAAKIRSLITLGSPHSGINT 139

Query: 563 IPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINN- 387
           IP C          V  +L    ++SW+QN +VQA Y+        Y  N+ FL  +NN 
Sbjct: 140 IPGCSPTNLICKAVVHSILGLGIWHSWIQNHVVQAQYYRTEKQYDKYLENNKFLTHLNNE 199

Query: 386 VRTVNKT-YIQNLNNLERFVLVMFDNDSIVQPKETEWFGFYAPGQAEKLVSLRESKIYLQ 210
           V   N T  I+ L  L+  V V F+ D IV+P  +  FG+      E  + + +  +Y  
Sbjct: 200 VLHDNYTRNIEKLKELDNLVAVSFERDDIVEPPYSTGFGWINETTGEN-IEMEDFVLY-- 256

Query: 209 DRLGLKKMDKAGKLIFLSTPGDHLR 135
           + LGLK +   GKL  +S PG HL+
Sbjct: 257 ESLGLKDLVNQGKLETISFPGRHLQ 281


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 530 CDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVF 405
           C   RK+++    N  + +S V A Y+ DP+DE   +  S F
Sbjct: 211 CTVPRKIVHVLQKNKNLISSAVNAFYYRDPIDENYCDRMSKF 252


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -2

Query: 521 VRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVF 405
           + ++ N      W +NSL+    W D  D  T   N  F
Sbjct: 86  IDEIFNSTQVPEWAKNSLLDTNTWLDTSDFNTSFTNETF 124


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -3

Query: 796 GNNTVEDFENGYFMN--PISKLNMYVRS*RPIQNYQTDSMSWVSHRDVSLF 650
           G   V  F NG      P  ++ + +     ++NY  + +SW+ +R+  +F
Sbjct: 214 GKQCVIGFNNGTMSQYTPAGEIKLRIPRPPSLENYFVECISWIENREFVVF 264


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
 Frame = -2

Query: 503 YAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINNVRTVNKTYIQNLN--NLERFV 330
           +AA    + N L    Y  +PL + +    +V LAD   V+    T I N+N   +++ +
Sbjct: 412 FAAKREEIFNKLSMPVY--EPLKDLSECIGNV-LADGEPVQFSVGTNIHNMNFSAIDKQI 468

Query: 329 LVMFDNDSIVQPKETEWFGFYAPGQAEKLVSLRESKIYLQDRL 201
             +      V P       + APGQ   L  +R   IY+ +R+
Sbjct: 469 RSIIPQRVQVSPAVLAK-NYLAPGQTTALAQMRAVFIYISERI 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,740
Number of Sequences: 5004
Number of extensions: 68201
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)