Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_K08
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0008 + 84955-85048,85165-85225,85375-85426,85554-85661,856...   146   2e-35
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984...    55   8e-08
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609...    29   3.3  
08_01_0588 + 5222536-5222656,5222887-5223440                           29   4.4  
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533...    29   5.8  

>03_01_0008 +
           84955-85048,85165-85225,85375-85426,85554-85661,
           85662-85715,86140-86190,86348-86410,87048-87113,
           87190-87228,87493-87615,88251-88343,88437-88661
          Length = 342

 Score =  146 bits (354), Expect = 2e-35
 Identities = 78/207 (37%), Positives = 120/207 (57%), Gaps = 2/207 (0%)
 Frame = -2

Query: 704 KLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCD 525
           +LSNG+N++G SQG    RAVV+ C    P +KN +SLGG H G   +P CG+     C 
Sbjct: 111 ELSNGYNIVGLSQGNLIGRAVVEFCDDG-PPVKNFISLGGPHAGTASVPLCGS--GIFCI 167

Query: 524 DVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSVFLADINNVRTV--NKTYIQNL 351
               L+    Y+ +VQ  L  + Y   P D   Y     FL  +NN      N TY +  
Sbjct: 168 LADSLIKMEIYSDYVQAHLAPSGYMKIPTDISDYLKGCRFLPKLNNELPGERNATYKERF 227

Query: 350 NNLERFVLVMFDNDSIVQPKETEWFGFYAPGQAEKLVSLRESKIYLQDRLGLKKMDKAGK 171
           ++LE  VL+MF +D+++ P+ET WFG+Y  G  + ++  +++K+Y++D +GLK +D  G+
Sbjct: 228 SSLENLVLIMFQDDAVLIPRETAWFGYYPDGGFDPVLPPQKTKLYMEDWIGLKTLDDEGR 287

Query: 170 LIFLSTPGDHLRFTEEWMIKNIIKPYL 90
           + F+S PG HL  ++  M+K I+ PYL
Sbjct: 288 VKFVSVPGGHLGISKTDMMKYIV-PYL 313


>10_08_0939 +
           21696941-21697049,21697171-21697255,21698385-21698457,
           21698553-21698609,21698660-21698713,21699196-21699246,
           21699441-21699503,21700453-21700518,21700625-21700663,
           21702190-21702271,21703479-21703536,21703698-21703914,
           21704248-21704697
          Length = 467

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 29/88 (32%), Positives = 47/88 (53%)
 Frame = -2

Query: 704 KLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCD 525
           +L  G++++G SQG    RAV++ C    P +KN +S+GG H G   +P CG+     C 
Sbjct: 114 ELRKGYSIVGLSQGNLIGRAVIEYCDGG-PPVKNFISIGGPHAGTASVPLCGS--GIVCV 170

Query: 524 DVRKLLNYAAYNSWVQNSLVQATYWHDP 441
            +  L+    Y+++VQ  L  + Y   P
Sbjct: 171 LIDALIKLEIYSNYVQAHLAPSGYLKIP 198



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 12/27 (44%), Positives = 22/27 (81%)
 Frame = -2

Query: 227 SKIYLQDRLGLKKMDKAGKLIFLSTPG 147
           +K+Y +D +GLK +++AG++ F+S PG
Sbjct: 200 TKLYTEDWIGLKALEEAGRVKFVSVPG 226


>04_03_0858 +
           20357519-20357573,20358072-20358119,20360675-20360922,
           20361152-20361363,20361480-20361741,20361832-20362143
          Length = 378

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 25/106 (23%), Positives = 49/106 (46%)
 Frame = -2

Query: 725 EKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGA 546
           E+LA + +L   F +MGFS G + + + ++   H+L  +  +  +G       G+P    
Sbjct: 154 EELADNLQLGPKFYLMGFSMGGEIMWSCLKHISHRLAGVAILAPVGNYWWS--GLP---- 207

Query: 545 LRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSV 408
             + +     + L    +  WV + L   TYW +   ++ + A+SV
Sbjct: 208 -SNMSWHVWNQQLPQDKWAVWVSHHLPWLTYWWN--SQKLFPASSV 250


>08_01_0588 + 5222536-5222656,5222887-5223440
          Length = 224

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 649 RIN*HPCEKPMTLNPFDSFGSAANFSHTYSTWRSGS*NIHFQNLQQY 789
           R+N  PC+ PM +N  D F +AA F    ST      N+   N+  +
Sbjct: 42  RVNGFPCKNPMEVNS-DDFFNAAKFDMPRSTMNKVGSNVTNLNVLNF 87


>04_03_0857 +
           20352331-20352582,20352740-20352951,20353047-20353308,
           20353418-20353726
          Length = 344

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 25/106 (23%), Positives = 49/106 (46%)
 Frame = -2

Query: 725 EKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGA 546
           E+LA + +L   F +MGFS G + + + ++   H+L  +  +  +G       G+P    
Sbjct: 121 EELADNLQLGPKFYLMGFSMGGEIMWSCLKHISHRLAGVAILGPVGNYWWS--GLP---- 174

Query: 545 LRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLDERTYEANSV 408
             + +     + L    +  WV + L   TYW +   ++ + A+SV
Sbjct: 175 -SNVSWHAWNQQLPQDKWAVWVSHHLPWLTYWWN--SQKLFPASSV 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,371,343
Number of Sequences: 37544
Number of extensions: 423770
Number of successful extensions: 953
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)