Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_K06
(419 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 62 3e-11
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 62 3e-11
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 27 1.2
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 26 2.7
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 25 3.6
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 4.8
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 25 4.8
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 4.8
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 6.3
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 24 8.4
>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 99
Score = 62.5 bits (145), Expect = 3e-11
Identities = 29/64 (45%), Positives = 44/64 (68%)
Frame = -3
Query: 294 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRATEVLE 115
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DKRA ++ +
Sbjct: 13 KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72
Query: 114 ATIG 103
+G
Sbjct: 73 KRLG 76
Score = 28.3 bits (60), Expect = 0.51
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -1
Query: 125 KXLKRRLGTHIRAKRKREELSNVXAQMR 42
K K+RLGT RAK K EEL++V R
Sbjct: 69 KLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 99
Score = 62.1 bits (144), Expect = 3e-11
Identities = 29/64 (45%), Positives = 44/64 (68%)
Frame = -3
Query: 294 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRATEVLE 115
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DKRA ++ +
Sbjct: 13 KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72
Query: 114 ATIG 103
+G
Sbjct: 73 KRLG 76
Score = 28.3 bits (60), Expect = 0.51
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -1
Query: 125 KXLKRRLGTHIRAKRKREELSNVXAQMR 42
K K+RLGT RAK K EEL++V R
Sbjct: 69 KLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 27.1 bits (57), Expect = 1.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 198 VVGHAQYEKRAMELLKVSKDKRATEVLEATIGHTHP 91
++ E+RA E+L SK+K + AT+G P
Sbjct: 116 IIAEGVPERRAREILVTSKEKNVVIIGPATVGGIKP 151
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 2.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 15 MVMSLGGCLPHLSXHVAKFFTLPLGADVCAQSSL 116
+V SL G L A+FFT PL ++VCA + +
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADV 577
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 79 SVKNLATCXLR*GRQPPRLITITI 8
SVKNL L+ PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 4.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +2
Query: 137 LSFDTLSNSIALFSY*ACPTTS 202
+S+D+LS+ +++ S+ CP T+
Sbjct: 79 MSYDSLSDDVSVLSFLDCPLTT 100
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 4.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 264 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 160
RPA L+ L+T SKFV + V Y K ++
Sbjct: 27 RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 4.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 149 TLSNSIALFSY*ACPTTSRTKSRTNLECF 235
T+++S LF+ A T+ TKS N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 24.6 bits (51), Expect = 6.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 286 DTLAASGYFSCFVAFSQAYCDFKTRSHDFG 375
D A + S F AFSQ Y + +S+DFG
Sbjct: 319 DLRLACCFESHFFAFSQHYPRYLEQSNDFG 348
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 24.2 bits (50), Expect = 8.4
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -3
Query: 198 VVGHAQYEKRAMELLKVSKDKR--ATEVL 118
++ HA ++ L+VSKDKR AT +L
Sbjct: 1119 LINHADILSSILDYLQVSKDKRRMATHIL 1147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,522,507
Number of Sequences: 5004
Number of extensions: 26480
Number of successful extensions: 71
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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