Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_K06
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 73 1e-13
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 71 3e-13
07_03_0078 - 13147741-13148913 30 0.66
12_02_1029 - 25521641-25521852,25521978-25522035,25522142-255221... 28 2.7
02_05_0177 + 26505956-26506202,26506838-26507247,26507448-265076... 27 6.1
04_01_0016 - 249026-249049,250193-250606 27 8.1
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 27 8.1
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 72.5 bits (170), Expect = 1e-13
Identities = 43/94 (45%), Positives = 55/94 (58%)
Frame = -3
Query: 360 PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 181
P+ + VG+ KGH TK + + RP+ KG TK FVR L+REVVG A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55
Query: 180 YEKRAMELLKVSKDKRATEVLEATIGHTHPRQEE 79
YEKR ELLKV KDKRA +V + +G TH R ++
Sbjct: 56 YEKRITELLKVGKDKRALKVAKRKLG-THKRAKK 88
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = -1
Query: 155 LRCQKTSVXLKXLKRRLGTHIRAKRKREELSNVXAQMR 42
L+ K LK KR+LGTH RAK+KREE++ V +MR
Sbjct: 64 LKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 71.3 bits (167), Expect = 3e-13
Identities = 42/94 (44%), Positives = 55/94 (58%)
Frame = -3
Query: 360 PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 181
P+ + VG+ KGH TK + + RP+ KG TK FVR+L+REV G A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55
Query: 180 YEKRAMELLKVSKDKRATEVLEATIGHTHPRQEE 79
YEKR ELLKV KDKRA +V + +G TH R ++
Sbjct: 56 YEKRITELLKVGKDKRALKVAKRKLG-THKRAKK 88
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = -1
Query: 155 LRCQKTSVXLKXLKRRLGTHIRAKRKREELSNVXAQMR 42
L+ K LK KR+LGTH RAK+KREE++ V +MR
Sbjct: 64 LKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101
>07_03_0078 - 13147741-13148913
Length = 390
Score = 30.3 bits (65), Expect = 0.66
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 257 AGLILMALSVIPLRPADILVVLWPF 331
AGL+ AL VIP P + +V WPF
Sbjct: 71 AGLLYFALVVIPALPGVLRLVAWPF 95
>12_02_1029 -
25521641-25521852,25521978-25522035,25522142-25522191,
25522280-25522585,25522666-25523068,25524573-25524624,
25525523-25525572,25526151-25526306,25526987-25527286
Length = 528
Score = 28.3 bits (60), Expect = 2.7
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = -3
Query: 393 FLRICQSEIMAPRFEIAVGLRKG--H-KTTKISAGRKGITDKAIRIRPARLKGLQTKHSK 223
FL IC E++A E+ RKG H K + R G+ ++++ + G TK K
Sbjct: 401 FLTICSQELLARGTELLKRTRKGALHWKVVSVYIHRTGVV--MLKMKSRHVAGTLTKKKK 458
Query: 222 -FVRDLVREV 196
V D+ R+V
Sbjct: 459 NVVVDVCRDV 468
>02_05_0177 +
26505956-26506202,26506838-26507247,26507448-26507624,
26507775-26507999,26508089-26508265,26508357-26508593,
26508855-26508944,26509102-26509254
Length = 571
Score = 27.1 bits (57), Expect = 6.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 71 LHASSWRGCVCPIVASXTSVARLSFDTLSNSIALFS-Y*ACPTTSRTKSRT 220
LH+ W GCV ++A +V LS ++ +S AC T R +T
Sbjct: 381 LHSQIWVGCVAAVLAGLFNVHELSHILSVGTLTGYSVVSACVITLRWNDKT 431
>04_01_0016 - 249026-249049,250193-250606
Length = 145
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 9 MVMVMSLGGCLPHLSXHVAKFFTLPLGADVC 101
+VM ++ GC+P V K LPL C
Sbjct: 56 LVMCTTVSGCMPGADFEVVKLLGLPLTTKRC 86
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 26.6 bits (56), Expect = 8.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = -3
Query: 393 FLRICQSEIMAPRFEIAVGLRKG--H-KTTKISAGRKGITDKAIRIRPARLKGLQTKHSK 223
FL IC E++A E+ RKG H K + R G+ ++++ + G TK K
Sbjct: 348 FLGICSQELLARGTELLKRTRKGALHWKVVSVYINRMGLV--MLKMKSRHVAGTITKKKK 405
Query: 222 -FVRDLVREV 196
V D+ ++V
Sbjct: 406 SVVIDVCKDV 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,314,683
Number of Sequences: 37544
Number of extensions: 185693
Number of successful extensions: 410
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -