Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_K06
(419 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0) 79 1e-15
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003
SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41) 30 0.89
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09) 27 4.8
SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 8.3
SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05) 27 8.3
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97) 27 8.3
>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
Length = 100
Score = 79.0 bits (186), Expect = 1e-15
Identities = 44/87 (50%), Positives = 55/87 (63%)
Frame = -3
Query: 348 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 169
+AVGL+KGHK TK + +P+R KG K KFVRD+VREVVG A YEKR
Sbjct: 1 MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50
Query: 168 AMELLKVSKDKRATEVLEATIGHTHPR 88
MELL++ KDKRA + + +G TH R
Sbjct: 51 VMELLRIGKDKRALKFCKKRLG-THVR 76
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = -1
Query: 155 LRCQKTSVXLKXLKRRLGTHIRAKRKREELSNVXAQMRK 39
LR K LK K+RLGTH+R KRKREE+++V A MRK
Sbjct: 55 LRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93
>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 37.9 bits (84), Expect = 0.003
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = -3
Query: 249 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRATEVLEATIGHTHPRQE 82
+GL+ K R ++ E GH Y+K L KVS+ K A +L+ T GH ++E
Sbjct: 88 RGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR-KHAQRILDGTAGHCSYKKE 142
Score = 36.7 bits (81), Expect = 0.008
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = -3
Query: 249 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRATEVLEATIGHTHPRQE 82
+GL+ K + ++ E GHA Y+K L KVS++ +A +++ T GH ++E
Sbjct: 32 RGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSRE-QAQRIIDETAGHGSYKKE 86
Score = 35.5 bits (78), Expect = 0.018
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -3
Query: 249 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRATEVLEATIGHTHPRQE 82
+GL+ + + ++ E GH Y+K L KVS+ K A +L+ T GH ++E
Sbjct: 60 RGLRKVSREQAQRIIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNTYKKE 114
Score = 33.9 bits (74), Expect = 0.055
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -3
Query: 210 LVREVVGHAQYEKRAMELLKVSKDKRATEVLEATIGHTHPRQE 82
++ E GH Y+K L KVS+ K A +L+ T GH ++E
Sbjct: 17 ILNETAGHGSYKKEHRGLRKVSR-KHAQRILDETAGHASYKKE 58
>SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 30.7 bits (66), Expect = 0.51
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +1
Query: 235 RLKTL*SSWPNS----DGFVCDTLAASGYFSCFVAFSQAYCDFKTRSHDFGLTDPKKKHR 402
RLK++ SW N+ G CD A+G F V FS + K R H D K +
Sbjct: 440 RLKSMRWSWENARTSKGGQSCDDPDATGDFEDEVTFSDPHLQKKFRRHSLKTLDTKTEPS 499
Query: 403 PAEF 414
+ F
Sbjct: 500 DSSF 503
>SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41)
Length = 506
Score = 29.9 bits (64), Expect = 0.89
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = -3
Query: 324 HKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVS 145
+K TK S G +++ K + KH + DL+ + H + +R ++ K
Sbjct: 83 NKDTKPSEGDTEDKQDIWKMKKKERKEYRKKHDESY-DLIHSLKQHYETLRRN-DVAKSQ 140
Query: 144 KDKRATEVLEATIGHTHPRQEE 79
K K +++L+ GHTH E
Sbjct: 141 KVKLISDILKLIAGHTHEEASE 162
>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 27.9 bits (59), Expect = 3.6
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Frame = -3
Query: 342 VGLRKGHKTT-----KISAGRKGITDKAIRIRPARLKGLQ----TKHS---KFVRDLVRE 199
V RKGHK T + G+KGI K R+ +R Q KHS K +R +RE
Sbjct: 1109 VSTRKGHKRTENYNDRKRDGKKGIDGKRERLSSSRSDDFQQSKMIKHSHLEKSLRQAMRE 1168
Query: 198 VVGHAQYEKRAMELLKVSKDK 136
+ H+ E KV K K
Sbjct: 1169 -LEHSSENSSEEEKRKVRKKK 1188
>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
Length = 1248
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 264 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 133
RP +L+ ++ + +VR L + G +Y + L++ SKD R
Sbjct: 625 RPNKLQVIKLSDANYVRTLENSIQGGIEYLRLGDHLVEFSKDFR 668
>SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 615
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 185 LNMRRGLWSYLRCQKTSVXLKXLKRRLGTHIRAKRKREE 69
L+ R+G+ S +C K + LKR + H AK+K E
Sbjct: 516 LHSRQGVVSCDKCHKEFINQIYLKRHMHIHKEAKKKPYE 554
>SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)
Length = 1442
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 164 WSYLRCQKTSVXLKXLKRRLGTHIRAKRKRE 72
W+ L C T V L KRRL + AKR E
Sbjct: 1303 WARLYCDVTPVALVLAKRRLTACLLAKRLDE 1333
>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
Length = 971
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 135 ACLLTP*VTP*PSSHIERVRQLRVLNHGQTW 227
A L+ P PS ++ R+ R NHG+TW
Sbjct: 782 AALMRKAKQPKPSPNLVHTRRERPRNHGRTW 812
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,991,536
Number of Sequences: 59808
Number of extensions: 223906
Number of successful extensions: 562
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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